Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2895g00046 ATGGATTCGGCGACAACAGCTCCTCCCCCGTTGCAGGAGCTGGAGCTCGACAACCTCAAAGCTCTCAAAGTCCTAGGAAAAGGTGCCATGGGTACCGTCTTCCTCGTCCACGACACCACCACCAACAACTTCCCCTTCGCCTTGAAAGTCGTCGACAAAACCTGCATCCACGCAAAGCGCGACGCCGAACGCCGCGCGCGTTGGGAAATCCAAGTCCTTTCAACTCTCTCCCACCCCTTTCTTCCTACCCTCCTGGGATCATTCGAGTCCCCACAGTTCTTAGCCTGGGCCCTACCCTACTGTCCCGGCGGCGACCTCAACGTCCTCCGCTACCGTCAAACCGACCACGCCTTCTCCCCCACCGTCATCCGCTTCTACGTAGCAGAAATCCTCTGCGCGCTCCACCACCTCCATTCTATGGGCATAGCATATTGTTACCTCAAACCAGAAAATGTCCTCATCCAAAACAACGGCCACATCACCCTCACCGATTTCGACCTCTCCCGCAAACTCACCCTCAAACCCAAACCCCTTCTTCCTTCGATGCCCGTGCCCAATCCCAAGCTCAAAGAACCCCGCCGAAAACACCGCCGCAACTTTTCCCGCTGGATCCCCCTCCCTGCCCTCGACGGGAACCGTAGGAAGGCCAACTCCAACGCCCTCAAGAAAGCCAAGTCCGCGCGAGTCAGCCCGGTGAGTAGACGAAAACTGAGTTTCTCCAACGGCGAGCGCTCCAACTCGTTCGTCGGCACCGAGGAGTACGTCTCGCCGGAGGTCGTTCGCGGCGACGGCCACGAGTTCGCCGTTGATTGGTGGTCCCTCGGAATACTCATCTACGAAATGCTCTACGGTACGACGCCGTTCAAAGGCAAGAATCGTAAGGAAACGTTCCGCAACGTCCTCATCAAGGCGCCGGAGTTCGTCGGCAAGAGAACCGCGCTAACGGACCTTATCGAGAAGCTCCTGACGAAGGATCCGACGAGGCGGTTGGGTTACACGCGCGGCGCTGCGGAGATCAAGGAGCATGAGTTCTTCCGAGGGGTGAAATGGGACCATTTAACCGAGGTTGTGCGGCCGCCGTTCATTCCGTCGCGGGACGATGGCTCCGCGGAGTCGATGGAGAAGCTTTTCGCCGGGAATTCTGGCATGGATATTAGGGGTTACTTTCAGAATCTTAGATCGGTGCCACCGTCACCGTCAGGGTCACCGTCGGCGTTCCCATCATCGCCGCCGTGGCAGTTAAAGAGAAATGTTTCTCTAACGGAATTCTAA 1272 0.5747 MDSATTAPPPLQELELDNLKALKVLGKGAMGTVFLVHDTTTNNFPFALKVVDKTCIHAKRDAERRARWEIQVLSTLSHPFLPTLLGSFESPQFLAWALPYCPGGDLNVLRYRQTDHAFSPTVIRFYVAEILCALHHLHSMGIAYCYLKPENVLIQNNGHITLTDFDLSRKLTLKPKPLLPSMPVPNPKLKEPRRKHRRNFSRWIPLPALDGNRRKANSNALKKAKSARVSPVSRRKLSFSNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWSLGILIYEMLYGTTPFKGKNRKETFRNVLIKAPEFVGKRTALTDLIEKLLTKDPTRRLGYTRGAAEIKEHEFFRGVKWDHLTEVVRPPFIPSRDDGSAESMEKLFAGNSGMDIRGYFQNLRSVPPSPSGSPSAFPSSPPWQLKRNVSLTEF 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2895g00046 423 MobiDBLite consensus disorder prediction 390 413 - -
Vium2895g00046 423 Gene3D Phosphorylase Kinase; domain 1 19 104 - -
Vium2895g00046 423 Gene3D Transferase(Phosphotransferase) domain 1 242 364 - -
Vium2895g00046 423 Gene3D Transferase(Phosphotransferase) domain 1 105 171 - -
Vium2895g00046 423 ProSitePatterns Protein kinases ATP-binding region signature. 25 49 IPR017441 GO:0005524
Vium2895g00046 423 FunFam Serine/threonine-protein kinase UCNL 19 104 - -
Vium2895g00046 423 PANTHER FLIPPASE KINASE 1-RELATED 13 366 - -
Vium2895g00046 423 SUPERFAMILY Protein kinase-like (PK-like) 16 411 IPR011009 -
Vium2895g00046 423 FunFam Serine/threonine-protein kinase OXI1 105 173 - -
Vium2895g00046 423 Pfam Protein kinase domain 240 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2895g00046 423 Pfam Protein kinase domain 21 175 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2895g00046 423 FunFam Serine/threonine-protein kinase OXI1 243 364 - -
Vium2895g00046 423 ProSiteProfiles Protein kinase domain profile. 19 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2895g00046 Vium-Chr2895 295766 297399 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2895g00046 14 423 AGC Kinase Gene Family AT3G20830 60.287 2.76e-165 469
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vium2895g00046 Pkinase 1.5e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2895g00046 - - gmx:100785281 638.262