Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2895g00045 ATGAACAACAACTGGCTTTCTTTCCCTCTTTCTCCCACTCATTCTTCCTTACCATCCCATGATCTTCAAGCAACTCAGTACCACCAATTTTCCCTTGGGCTGGTGAACGAAAGCATGGAAAACCCTTTCCAAAATCATGATTGGAATCTGATTAACACTCATAGCAGCAACGAAGTTCCAAAAGTGGCTGATTTTCTTGGAGTGAGCAAGTCTGAAAATCAGTCAGAGCTTGCTGCTTTAAACGAAATTCAGTCAAATGATTCAGATTATCTGTTCACAAACAACAGTCTGGTACCTTTGCAAAACCCCGTGGTGGACACACCAAGCAATGAGTATCAAGAAAATGCTAACAGTAACTTGCAATCGTTGACATTATCCATGGGAAGTGGTAAGGATTCTACATGTGAAACCAGTGGTGAAAATAGTACAAACACTGTCGAAGCTGCACCTAGAAGAACTTTGGATACTTTCGGTCAGAGAACATCCATATATCGTGGAGTAACACGACATAGATGGACTGGAAGGTATGAAGCTCACCTTTGGGATAACAGCTATAGAAGGGAAGGACAATCAAGAAAAGGACGCCAAGTTTATTTGGGTGGATATGATAAAGAAGAGAAAGCAGCTAGGGCTTATGATTTAGCAGCACTGAAGTACTGGGGAACATCCACCACTACCAACTTTCCAATTAGCAACTACGAGAAGGAATTGGATGAAATGAAACACATGACCAGACAAGAATTTGTTGCCGCTATAAGAAGGAAAAGTAGTGGTTTCTCTAGAGGTGCATCAATGTATCGCGGAGTTACAAGGCATCACCAACACGGAAGATGGCAAGCAAGGATTGGTAGAGTTGCAGGAAACAAAGATCTTTACTTGGGAACTTTCAGTACTGAGGAAGAGGCTGCAGAAGCTTACGACATAGCAGCGATAAAGTTCAGAGGTCTCAACGCTGTCACAAACTTTGACATGAGCCGTTATGACGTGAAAGCTATTCTCGAAAGCAACACTCTCCCGATAGGAGGAGGCGCTGCAAAACGTCTGAAAGAAGCTCAAGCTCTAGAATCTTCTAGAAAACGTGAAGAGATGATTGCACTGGGCTCATCTACCTTCCAATATGGAACCTCAAGCTCTTCCAGGCTACACGCTTACCCTCTAATGCAGCACCACCAGTTCGAGCAACCTCAACCTCTGCTAACCTTGCAAAACCATGACATAAGCTCTCACTTCTCTCACCAGGACCCTTTACACCAGGGTTACATCCAAACGCAGCTTCAGTTGCACCAGCAGAGTGGTGTTTCTTCTTACCTCCAGAATAATCCTCAGTTCTACGGCGGCTACCTTCAGAACCACCCTGCATTGCTTCAGGGAATGATGAACATGGGGTCTTCTTCTTCTTCATCTGTGTTGGAGAATAATAACAACAATAATAGCAGTGTTGGTGGGTTTGCAGCAGGGAGTGGGTTTGGTATGGCTTCGAATCCATCGTCGGGTAACGCAGTGGGCGCGGCGGAGGAACTTGGCTTGGTGAAGGTTGACTATGACATGCCAGCCGGAGGTTACGGCGGTTGGTCGGCGGGGGCGGCGGAATCCATGCAGACGTCAAATGGTGGGGTGTTCACAATGTGGAATGAGTGA 1638 0.456 MNNNWLSFPLSPTHSSLPSHDLQATQYHQFSLGLVNESMENPFQNHDWNLINTHSSNEVPKVADFLGVSKSENQSELAALNEIQSNDSDYLFTNNSLVPLQNPVVDTPSNEYQENANSNLQSLTLSMGSGKDSTCETSGENSTNTVEAAPRRTLDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSYRREGQSRKGRQVYLGGYDKEEKAARAYDLAALKYWGTSTTTNFPISNYEKELDEMKHMTRQEFVAAIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKAILESNTLPIGGGAAKRLKEAQALESSRKREEMIALGSSTFQYGTSSSSRLHAYPLMQHHQFEQPQPLLTLQNHDISSHFSHQDPLHQGYIQTQLQLHQQSGVSSYLQNNPQFYGGYLQNHPALLQGMMNMGSSSSSSVLENNNNNNSSVGGFAAGSGFGMASNPSSGNAVGAAEELGLVKVDYDMPAGGYGGWSAGAAESMQTSNGGVFTMWNE 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2895g00045 545 FunFam AP2-like ethylene-responsive transcription factor ANT 162 231 - -
Vium2895g00045 545 SUPERFAMILY DNA-binding domain 162 231 IPR016177 GO:0003677
Vium2895g00045 545 Gene3D AP2/ERF domain 163 231 IPR036955 GO:0003700|GO:0006355
Vium2895g00045 545 Gene3D AP2/ERF domain 265 325 IPR036955 GO:0003700|GO:0006355
Vium2895g00045 545 ProSiteProfiles AP2/ERF domain profile. 265 323 IPR001471 GO:0003700|GO:0006355
Vium2895g00045 545 CDD AP2 264 325 IPR001471 GO:0003700|GO:0006355
Vium2895g00045 545 PRINTS Ethylene responsive element binding protein signature 164 175 IPR001471 GO:0003700|GO:0006355
Vium2895g00045 545 PRINTS Ethylene responsive element binding protein signature 305 325 IPR001471 GO:0003700|GO:0006355
Vium2895g00045 545 CDD AP2 162 231 IPR001471 GO:0003700|GO:0006355
Vium2895g00045 545 SUPERFAMILY DNA-binding domain 264 325 IPR016177 GO:0003677
Vium2895g00045 545 SMART rav1_2 163 235 IPR001471 GO:0003700|GO:0006355
Vium2895g00045 545 SMART rav1_2 265 329 IPR001471 GO:0003700|GO:0006355
Vium2895g00045 545 ProSiteProfiles AP2/ERF domain profile. 163 229 IPR001471 GO:0003700|GO:0006355
Vium2895g00045 545 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 60 417 - -
Vium2895g00045 545 FunFam AP2-like ethylene-responsive transcription factor 264 325 - -
Vium2895g00045 545 Pfam AP2 domain 163 221 IPR001471 GO:0003700|GO:0006355
Vium2895g00045 545 Pfam AP2 domain 266 315 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2895g00045 Vium-Chr2895 267303 270684 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2895g00045 3 545 AP2-EREBP Transcription Factor Family AT1G51190 64.202 0.0 646
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Vium2895g00045 AP2 1.4e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2895g00045 K09285 - gmx:100788471 932.554