Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2895g00036 ATGACCAATTCCTACAGATCCAATGACCTTAACTTTTGCTTGGACCTCAATTCACCATGTCTTCTCTCTTCTCCTTCTTCATCTCCTCCTCCCATCAATCCTTCATTCTATTTTCCTTCCAATTATCATACCTACACTTCTCCTCCTCCTCATCAAACAAAACTCCTTCCTTTCCTTCATCTAAGACATCAACAACAACAACAAGATGATGATGAAGAAGAAGAAGAATGTCTTGAATCTTCATTCATTGCCATGGAAGTTGACAAGAAAAAGAAAGTGCTGAGTACATCATCATCATCCAAGTGCTTAGACGAAGAGGATGCTGTCACTGTGGCTTTACACTTAGGGCTTCCAAGCACTGCTGCATCTGCTGATTTAGCTTCAAGCCTATACTCAGCAGAGGTTTCAGACAAAGGAGAAAAAACCACTGATGCTTCGGGGTTACTGTCAGATAGAATTAACAGAGGACAATATTGGATCCCTACTTCTGCTCAGATTCTGATTGGTCCAACACAGTTCGCATGCCCTCTTTGTTTCAAGACGTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCTCAATATAGAAAGGGACCAGAGTCTCTAAGGGGAACACAACCAACAGCTATGCTAAGGCTCCCTTGCTATTGCTGTGCTCCAGGATGCAAGAACAACATCGACCATCCGAGAGCAAAACCACTCAAAGACTTCAGAACCCTTCAAACACATTACAAGAGAAAGCATGGGACAAAGCCTTTCGTGTGCAGAAAATGTTGCAAAACCTTTGCTGTGAGGGGTGATTGGAGAACTCATGAGAAGAACTGTGGGAAACGCTGGTATTGCTCTTGTGGCTCTGATTTCAAGCACAAAAGGTCCCTCAAAGATCATATCAAGGCATTTGGATATGGACACACGGCTCATGGAAATGACTGCATGAACCTTGACCAAGATGATGATCAAGCAGGTTCTGAAATTGAACAAGAAAATTAA 1002 0.4271 MTNSYRSNDLNFCLDLNSPCLLSSPSSSPPPINPSFYFPSNYHTYTSPPPHQTKLLPFLHLRHQQQQQDDDEEEEECLESSFIAMEVDKKKKVLSTSSSSKCLDEEDAVTVALHLGLPSTAASADLASSLYSAEVSDKGEKTTDASGLLSDRINRGQYWIPTSAQILIGPTQFACPLCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTAMLRLPCYCCAPGCKNNIDHPRAKPLKDFRTLQTHYKRKHGTKPFVCRKCCKTFAVRGDWRTHEKNCGKRWYCSCGSDFKHKRSLKDHIKAFGYGHTAHGNDCMNLDQDDDQAGSEIEQEN 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2895g00036 333 Gene3D Classic Zinc Finger 234 310 - -
Vium2895g00036 333 FunFam Zinc finger protein WIP2 226 308 - -
Vium2895g00036 333 ProSiteProfiles Zinc finger C2H2 type domain profile. 173 200 IPR013087 -
Vium2895g00036 333 SUPERFAMILY beta-beta-alpha zinc fingers 239 277 IPR036236 -
Vium2895g00036 333 PANTHER ZINC FINGER PROTEIN WIP2 27 332 IPR043584 GO:0003700|GO:0010468
Vium2895g00036 333 ProSitePatterns Zinc finger C2H2 type domain signature. 175 195 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2895g00036 Vium-Chr2895 213343 215934 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2895g00036 109 331 C2H2 Transcription Factor Family AT3G57670 65.354 1.36e-116 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium2895g00036 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2895g00036 - - gmx:100802239 491.115