Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2895g00025 ATGGCGTCGACGGCGATCGAGGAAGTAAGAACTCTTTGGATTGGCGATTTGCAGTACTGGGTCGACGAGTCGTACCTCTCGCAGTGCTTCGCCCACAGCGGCGAAGTGGTTTCCATCAAAATCATTCGCAACAAGATGACGGGCCAGCCTGAGGGCTACGGCTTCGTGGAATTCGTTTCTCACGCGGCGGCGGAGGCCTTTCTCCGCACCTACAACGGCACCCAAATGCCCGGTACGGAACAGACCTTCCGGCTTAATTGGGCCTCCTTCGGAGACTCTGGGCCCGACCATTCCATATTCGTCGGCGATCTCGCCCCCGACGTTACTGACTTCCTCCTTCAGGAAACTTTCCGGGCCCATTATCCTTCCGTCAAAGGGGCCAAAGTCGTCACCGACCCCGCCACTGGCCGCTCCAAGGGCTATGGCTTTGTTAAGTTCACCGACGAGACGCAGAGGAACCGCGCCATGACTGAAATGAACGGTGTTTATTGCTCCACGCGCCCTATGCGTATCAGTGCCGCTACTCCTAAAAAGAACGCTTCTTTTCAAAACCAATATGCTCCACCTAAAGCAATGTATCAATTTCCTGCATATACTGCTCCGGTGACTACTGTTGAGCCAGAAAATGATGTGAATAATACCACTGTTTGTATTGGTAATTTGGATCTTAATGTGACAGAGGAGGAGCTTAAGCAAACCTTTATGCAATTTGGAGATATTGTGTCGGTCAAAATTTATGCGGGCAAAGGATACGGTTATGTTCAATTTGGAACTAGAGCCTCTGCTGAAGATGCGATTCAGAGGATGCAGGGAAAGATAATAGGTCAACAATTGATCCAAATTTCTTGGGCTAGTACCTTGACAGCTAGACAGGATGTACCCAGTGGCTGGGGCGCTCAGATGGACCCAAATCAATGGAATGCCTATTATGGATATGGACAGGGTTACGAGGCATATGTTTATGGTGCGGCTCATGATCCCTCCTTGTACGCTTATGGTGCATACGCTGGTTATACTGCACAATACCCTCAACAGGTTGAAGGTGGTCAAGACATGTCAGTATCTATGCCTGTGGAGGAGTCGTATGATCCCTTGGCATTGCCTGATGTTGACAAATTGAATGCTGCATATCTTTCGACGCATGGAAATTCCATTTTAGGACGGTCCCTTTGGCAGAGAACTTCGAAATCTTTACAGCAAGCATAG 1206 0.4942 MASTAIEEVRTLWIGDLQYWVDESYLSQCFAHSGEVVSIKIIRNKMTGQPEGYGFVEFVSHAAAEAFLRTYNGTQMPGTEQTFRLNWASFGDSGPDHSIFVGDLAPDVTDFLLQETFRAHYPSVKGAKVVTDPATGRSKGYGFVKFTDETQRNRAMTEMNGVYCSTRPMRISAATPKKNASFQNQYAPPKAMYQFPAYTAPVTTVEPENDVNNTTVCIGNLDLNVTEEELKQTFMQFGDIVSVKIYAGKGYGYVQFGTRASAEDAIQRMQGKIIGQQLIQISWASTLTARQDVPSGWGAQMDPNQWNAYYGYGQGYEAYVYGAAHDPSLYAYGAYAGYTAQYPQQVEGGQDMSVSMPVEESYDPLALPDVDKLNAAYLSTHGNSILGRSLWQRTSKSLQQA 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2895g00025 401 SUPERFAMILY RNA-binding domain, RBD 5 78 IPR035979 GO:0003676
Vium2895g00025 401 CDD RRM1_SECp43_like 11 91 - -
Vium2895g00025 401 FunFam Polyadenylate-binding protein RBP47B 9 88 - -
Vium2895g00025 401 SUPERFAMILY RNA-binding domain, RBD 196 315 IPR035979 GO:0003676
Vium2895g00025 401 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 7 289 - -
Vium2895g00025 401 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 97 176 IPR000504 GO:0003723
Vium2895g00025 401 CDD RRM2_SECp43_like 96 175 - -
Vium2895g00025 401 FunFam Polyadenylate-binding protein RBP47B 89 187 - -
Vium2895g00025 401 SUPERFAMILY RNA-binding domain, RBD 95 185 IPR035979 GO:0003676
Vium2895g00025 401 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 80 IPR000504 GO:0003723
Vium2895g00025 401 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 99 164 IPR000504 GO:0003723
Vium2895g00025 401 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 216 279 IPR000504 GO:0003723
Vium2895g00025 401 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 214 286 IPR000504 GO:0003723
Vium2895g00025 401 SMART rrm1_1 11 86 IPR000504 GO:0003723
Vium2895g00025 401 SMART rrm1_1 215 282 IPR000504 GO:0003723
Vium2895g00025 401 SMART rrm1_1 98 172 IPR000504 GO:0003723
Vium2895g00025 401 Gene3D - 199 292 IPR012677 -
Vium2895g00025 401 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 90 IPR000504 GO:0003723
Vium2895g00025 401 FunFam polyadenylate-binding protein RBP45 197 293 - -
Vium2895g00025 401 Gene3D - 96 173 IPR012677 -
Vium2895g00025 401 Gene3D - 9 89 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2895g00025 Vium-Chr2895 147535 150969 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2895g00025 9 303 Eukaryotic Initiation Factors Gene Family AT2G23350 26.299 1.91e-23 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2895g00025 - - gmx:100813616 724.161