Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2895g00024 ATGGAGATCATGTCAAGCTTCGACAGAGACCTCAATGACATGAGGGAGTATTATGAGAGCGGAAAGACTAAGCAAGCATCTTGGAGAGAATCTCAGCTCAAAGCCTTGCGTTGCTTCCTCATGGAAAAACAACAACATATCATGGAGGCCCTTATGCAGGATCTTGGGAAACATCAACTTGAAGCTTTCAGAGACGAGATAGGGACTTTGATCAAGACCTTAAATCTGGCATTGAAGTCTTTGAAAGCTTGGATGTCAGGCAAAAAGGCTGAATTGCCACAAGTAGCATTGCTCACCAGTGCAGAAATTGTTTCAGAACCACTTGGTCTGGTCCTCATTATTTCATCTTGGAATTTCCCATTTGGACTATCCTTGGAGCCACTTATTGGAGCAATAGCTGCGGGAAACGTGGCAATCTTAAAGCCTTCAGAGTTGTCTCCAGCTTCTTCTTCTCTACTCGCTTCCAGTCTCACCTCTTATTTGGACAATAAAGCCATTAAGGTGATCCAAGGAGGACCACAAGAGACCCAACAGCTACTAGAGCAAAGATGGGACAAAATCTTTTTCACAGGAAGTGCACGTGTGGGGCGGATTGTTATGTCTGCTGCTGTGAAGAATTTGACTCCTGTGACTTTGGAGTTGGGTGGAAAATGCCCTGCAGTTGTTGACTCCCTCTCATCTTCCTGGGATATAGAGACCACTGTGAAGAGAATTGTTGTGGGAAAATTTGGGACTTGTGCTGGTCAAGCATGCATAGCCATTGATTATGTCCTGGTGGAAAATAAGTATTGCTCAAAACTGGTGGAACTGATGAAGGTCTGGATCAAGAAAATGTTTGGAGAGAACCCTCAACGGTCCAAAACTATCACCAGGATAGTTAACAAACACCACTTCTCTAGATTGAACAACCTTCTTGCTGATAAAATGGTCAAAGAATCAGTGGTTTATGGTGGCTCAGTGGACGAAGAAAACTTATTTATTGAGCCAACCATCTTGGTGGATCCCCCACTGGAGGCAGCAATTATGTCAGAAGAGATCTTTGGACCATTACTTCCAATTATTACTGTAGAGAAGATTGAGGACAGTATTAGATTCATAAGGAGTAGGCCTAAGCCTCTTGCCCTTTATGTCTTCACCAAAAACAAAACCCTAGAGAGAAGAATGATATCTGAAACATCATCTGGCAGTTTAACTTTCAATGATGCAATACTACAATATGCAGCTGATTCTCTTCCATTTGGAGGAGTGGGAGAAAGTGGGTTTGGCATGTACCATGGGAAGTTCTCCTTTGACACATTTAGCCACCAGAAGGCAATAGTAAGAAGAAGTTTTCTCACTGATTTCTGGTTTAGATATCCTCCATGGACACTAAATAAGTTGCAACTACTTGAAGAGTGTTACAATTATGATTATCTGGGGATGCTCCTTGTCATGCTGGGCTTGAAGAGATCATCAAAACGCTTATTTGCAAATCATATGTAG 1482 0.4244 MEIMSSFDRDLNDMREYYESGKTKQASWRESQLKALRCFLMEKQQHIMEALMQDLGKHQLEAFRDEIGTLIKTLNLALKSLKAWMSGKKAELPQVALLTSAEIVSEPLGLVLIISSWNFPFGLSLEPLIGAIAAGNVAILKPSELSPASSSLLASSLTSYLDNKAIKVIQGGPQETQQLLEQRWDKIFFTGSARVGRIVMSAAVKNLTPVTLELGGKCPAVVDSLSSSWDIETTVKRIVVGKFGTCAGQACIAIDYVLVENKYCSKLVELMKVWIKKMFGENPQRSKTITRIVNKHHFSRLNNLLADKMVKESVVYGGSVDEENLFIEPTILVDPPLEAAIMSEEIFGPLLPIITVEKIEDSIRFIRSRPKPLALYVFTKNKTLERRMISETSSGSLTFNDAILQYAADSLPFGGVGESGFGMYHGKFSFDTFSHQKAIVRRSFLTDFWFRYPPWTLNKLQLLEECYNYDYLGMLLVMLGLKRSSKRLFANHM 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2895g00024 493 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 216 419 IPR016163 GO:0016620
Vium2895g00024 493 PANTHER ALDEHYDE DEHYDROGENASE 4 481 IPR012394 GO:0006081
Vium2895g00024 493 FunFam Aldehyde dehydrogenase 15 219 - -
Vium2895g00024 493 Pfam Aldehyde dehydrogenase family 14 439 IPR015590 GO:0016491
Vium2895g00024 493 PIRSF ALDH 1 476 IPR012394 GO:0006081
Vium2895g00024 493 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 15 437 IPR016162 GO:0016491
Vium2895g00024 493 SUPERFAMILY ALDH-like 14 456 IPR016161 GO:0016491
Vium2895g00024 493 FunFam Aldehyde dehydrogenase 216 419 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2895g00024 Vium-Chr2895 143092 145745 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2895g00024 1 483 Aldehyde Dehydrogenase Gene Family AT4G36250 53.512 0.0 563
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2895g00024 K00128 - gmx:100817701 837.41