Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2895g00019 ATGAGGAAGCCCGAGGTGTCTGCAAAAAACAGCTCCAACATTAATAACAAGCTTCGAAAGGGCTTGTGGTCACCTGAAGAAGATGACAAGCTCATGAACTACATGCTAAACAGTGGACAAGGTTGTTGGAGCGATGTAGCCAGAAATGCTGGCCTTCAAAGGTGTGGCAAAAGTTGTCGCCTTCGATGGATCAATTACTTGAGGCCTGATCTCAAACGAGGTGCATTCTCTCCACAAGAAGAGGAACTCATCGTCCATTTGCATTCCCTTCTCGGAAACAGATGGTCTCAAATAGCGGCGCGCTTGCCTGGGAGAACTGACAATGAAATTAAGAATTTTTGGAATTCAACAATAAAGAAAAGACTGAAGAACATGTCAGCCAACACCTCACCAAACGGAAGCGAGTCCTCATATGAGCCTAACAAAGACCTTAACATGGCAGGGTTTACTACTTCTAATACCCATCAAGATCAACATGCTGATTTTATGCCTATGTTCAATTCATCATCATCTCCATCACCATCCATGCATGCCACAGTTCTCAATTCCATTATTGACAGGTTGCCTATGCTAGATCATGGACTAAACGTGCCAGTTTCGGGTGGATTCTTCAATACTACTGGGCCATGCTTCTCAACGCAAAGTGGAGTTGATCACAAAGGTTTATATTTGGAAAATGGAGGAGTATTTGGGAGTGTAAATATTGGGGCAGAAGGGGATATGTATGTTCCTCCTCTAGAGAGTGTTAGCACTACTTCTGACCATAACCTGAAAGTGGAGAGCACCTGCAACACAGATACTAACAATAGTTACTTTGATGACATAAACAGCATCATCCTTAATAACTGCAGCAACAAGAGAACTGAAAATAGGGCTGGAGTGGAGAATTTATTTCAACAAGAGTTAACCATGGGAGAGTGGGACTTGGAGGAGTTGATGAACGATGTTTCATCCTTTCCCTTTCTTGATTTTTCAAATATCCAATAA 987 0.4245 MRKPEVSAKNSSNINNKLRKGLWSPEEDDKLMNYMLNSGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIVHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKNMSANTSPNGSESSYEPNKDLNMAGFTTSNTHQDQHADFMPMFNSSSSPSPSMHATVLNSIIDRLPMLDHGLNVPVSGGFFNTTGPCFSTQSGVDHKGLYLENGGVFGSVNIGAEGDMYVPPLESVSTTSDHNLKVESTCNTDTNNSYFDDINSIILNNCSNKRTENRAGVENLFQQELTMGEWDLEELMNDVSSFPFLDFSNIQ 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2895g00019 328 SUPERFAMILY Homeodomain-like 18 114 IPR009057 -
Vium2895g00019 328 Gene3D - 74 145 - -
Vium2895g00019 328 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 67 IPR017930 -
Vium2895g00019 328 ProSiteProfiles Myb-like domain profile. 68 118 IPR001005 -
Vium2895g00019 328 FunFam MYB transcription factor 17 73 - -
Vium2895g00019 328 CDD SANT 75 115 IPR001005 -
Vium2895g00019 328 SMART sant 19 69 IPR001005 -
Vium2895g00019 328 SMART sant 72 120 IPR001005 -
Vium2895g00019 328 ProSiteProfiles Myb-like domain profile. 15 67 IPR001005 -
Vium2895g00019 328 FunFam Transcription factor MYB46 74 143 - -
Vium2895g00019 328 PANTHER MYB DOMAIN PROTEIN 55 15 268 - -
Vium2895g00019 328 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 122 IPR017930 -
Vium2895g00019 328 Pfam Myb-like DNA-binding domain 20 67 IPR001005 -
Vium2895g00019 328 Pfam Myb-like DNA-binding domain 73 116 IPR001005 -
Vium2895g00019 328 MobiDBLite consensus disorder prediction 125 154 - -
Vium2895g00019 328 Gene3D - 17 73 - -
Vium2895g00019 328 CDD SANT 23 67 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2895g00019 Vium-Chr2895 104055 106610 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2895g00019 1 321 MYB Transcription Factor Family AT5G12870 46.273 1.28e-77 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium2895g00019 Myb_DNA-binding 9.5e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2895g00019 K09422 - gmx:100786151 585.874