Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2895g00018 ATGAGGAAGCCCGAGGTGTCTGCAAAAAACAGCTCCAACATTAATAACAAGCTTCGAAAGGGCTTGTGGTCACCTGAAGAAGATGACAAGCTCATGAACTACATGCTAAACAGTGGACAAGGTTGTTGGAGCGATGTAGCCAGAAATGCTGGCCTTCAAAGGTGTGGCAAAAGTTGTCGCCTTCGATGGATCAATTACTTGAGGCCTGATCTCAAACGAGGTGCATTCTCTCCACAAGAAGAGGAACTCATCGTCCATTTGCATTCCCTTCTCGGAAACAGGTTGCCTATGCTAGATCATGGACTAAACGTGCCAGTTTCGGGTGGATTCTTCAATACTACTGGGCCATGCTTCTCAACGCAAAGTGGAGTTGATCACAAAGGTTTATATTTGGAAAATGGAGGAGTATTTGGGAGTGTAAATATTGGGGCAGAAGGGGATATGTATGTTCCTCCTCTAGAGAGTGTTAGCACTACTTCTGACCATAACCTGAAAGTGGAGAGCACCTGCAACACAGATACTAACAATAGTTACTTTGATGACATAAACAGCATCATCCTTAATAACTGCAGCAACAAGAGAACTGAAAATAGGGCTGGAGTGGAGAATTTATTTCAACAAGAGTTAACCATGGGAGAGTGGGACTTGGAGGAGTTGATGAACGATGTTTCATCCTTTCCCTTTCTTGATTTTTCAAATATCCAATAA 708 0.4308 MRKPEVSAKNSSNINNKLRKGLWSPEEDDKLMNYMLNSGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIVHLHSLLGNRLPMLDHGLNVPVSGGFFNTTGPCFSTQSGVDHKGLYLENGGVFGSVNIGAEGDMYVPPLESVSTTSDHNLKVESTCNTDTNNSYFDDINSIILNNCSNKRTENRAGVENLFQQELTMGEWDLEELMNDVSSFPFLDFSNIQ 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2895g00018 235 ProSiteProfiles Myb-like domain profile. 15 67 IPR001005 -
Vium2895g00018 235 FunFam MYB transcription factor 17 73 - -
Vium2895g00018 235 Gene3D - 17 73 - -
Vium2895g00018 235 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 71 IPR017930 -
Vium2895g00018 235 SUPERFAMILY Homeodomain-like 22 95 IPR009057 -
Vium2895g00018 235 Pfam Myb-like DNA-binding domain 23 82 - -
Vium2895g00018 235 PANTHER MYB DOMAIN PROTEIN 55 15 94 - -
Vium2895g00018 235 CDD SANT 23 67 IPR001005 -
Vium2895g00018 235 SMART sant 19 69 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2895g00018 Vium-Chr2895 104055 106610 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2895g00018 1 94 MYB Transcription Factor Family AT5G12870 77.660 1.41e-50 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vium2895g00018 Myb_DNA-bind_6 2.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2895g00018 K09422 - gmx:100786151 261.536