Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2895g00017 ATGGCCTCTGTAGCACTCACCACCACCCTCCCCTCTCTCCGCCTCCGCCGCAACACCGCCGCCGCCGCCCTCAAACCCAACCGTCTGACTTCCTTTCCACCTTCCTCACTCAAACCAAACCTCAGAACTTCGATTTCCTCCTTCCCAAATATCTCACTTAAAAAAACGAACCTCGTTCTCAGTCGCAAGCACTCTTCTCTCACTGTTAGAGCTACCGCAGCCTCCATCACACCGGCGCCGGCTCCGGCGCCGATTCAGCCATGGCAAGGTGCCGCAATAAAACCACTATTAGCCTCCATCGCCACGGGAGTGATCCTCTGGTTCACACCAGTTCCCGCGGGCGTAAACCGTAACGCGTGGCAATTGCTCGCGATCTTCTTAGGCACAATCGTCGGCATTATAACCCAACCACTGCCCCTCGGCGCGGTTGCGATATTAGGTTTGGGCGTTTCCGTTCTCACCAAAACCCTAACGTTCGCCGCCGCGTTCTCTGGCTTCGGTGACCCGATCCCCTGGCTCATCGCACTCGCCTTCTTCTTCGCCAAGGGATTCATTAAAACTGGCCTCGGGAACCGTGTTGCGTACCAGTTCGTGAAGCTCTTCGGCAGCTCCTCGCTCGGGTTAGGTTACAGCCTTGTCTTCAGCGAGGCGCTGCTGGCGCCGGCGATCCCCTCAGTGTCAGCGAGGGCGGGCGGGATATTCCTTCCGCTCGTAAAGGCGCTGTGCGTGGCGTGCGGGAGCAACGTTGGCGACGGGACGGAGAACAGGTTGGGGGCGTGGCTCATGCTCACGTGCTTTCAGACTTCGGTGATTACGTCGGCGATGTTTCTAACGGCGATGGCGGCGAATCCGCTCTGTGCGACGCTGACGCAAAGTTCCATTAACCAGACGATTGGGTGGTTGGACTGGGCCAAAGCTGCAATTGTCCCTGGCCTGGTGTCGCTGGTGTTGGTTCCGTTGATTTTGTATGTTATATACCCTCCGACTCTGAAGAGTAGTCCTGATGCTCCTAAGCTTGCGAGAGAGAAGTTGGAGAAAATGGGGCCCATGACAACCAATGAGAAGATCATGACTGCTACGTTGTTTCTCACGGTGGGACTTTGGGTATTTGGAGGACTTCTTAATATTGATGCTGTATCTGCTGCAATTCTTGGATTATCTGTACTTCTTGTCACAGGGGTTGTTACATGGAAGGAGTGCTTAGGGGAAGGAGTTGCCTGGGATACTCTCACATGGTTTGCTGCCCTCATAGCAATGGCTGGGTATTTGAACAAATATGGCCTCATTTCTTGGTTCAGTCAAACGGTAGTCAAGTTTGTTGGTGGATTGGGTCTATCATGGCAACTATCTTTTGGGATTCTGGTTCTTCTCTACTTTTACTCTCATTACTTCTTTGCAAGTGGAGCTGCTCATATTGGCGCCATGTTTACTGCATTTTTGTCTGTTTCCACTGCTCTGGGGACTCCGCCATTCTTCGGAGCCATAGTGCTGTCGTTCCTCTCCAACCTTATGGGTGGCCTTACTCATTACGGAATCGGATCAGCTCCGGTGTTTTTCGGTGCCAACTATGTTCCCCTTGCTAAATGGTGGGGTTATGGATTCCTCATTAGTATTGTTAACATTATAATCTGGCTTGGACTTGGAGGGGTTTGGTGGAAATTCATTGGCTTATGGTAA 1677 0.5265 MASVALTTTLPSLRLRRNTAAAALKPNRLTSFPPSSLKPNLRTSISSFPNISLKKTNLVLSRKHSSLTVRATAASITPAPAPAPIQPWQGAAIKPLLASIATGVILWFTPVPAGVNRNAWQLLAIFLGTIVGIITQPLPLGAVAILGLGVSVLTKTLTFAAAFSGFGDPIPWLIALAFFFAKGFIKTGLGNRVAYQFVKLFGSSSLGLGYSLVFSEALLAPAIPSVSARAGGIFLPLVKALCVACGSNVGDGTENRLGAWLMLTCFQTSVITSAMFLTAMAANPLCATLTQSSINQTIGWLDWAKAAIVPGLVSLVLVPLILYVIYPPTLKSSPDAPKLAREKLEKMGPMTTNEKIMTATLFLTVGLWVFGGLLNIDAVSAAILGLSVLLVTGVVTWKECLGEGVAWDTLTWFAALIAMAGYLNKYGLISWFSQTVVKFVGGLGLSWQLSFGILVLLYFYSHYFFASGAAHIGAMFTAFLSVSTALGTPPFFGAIVLSFLSNLMGGLTHYGIGSAPVFFGANYVPLAKWWGYGFLISIVNIIIWLGLGGVWWKFIGLW 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2895g00017 558 CDD ArsB_NhaD_permease 130 552 - -
Vium2895g00017 558 Pfam Sodium:sulfate symporter transmembrane region 95 558 IPR001898 GO:0016020|GO:0022857|GO:0055085
Vium2895g00017 558 PANTHER DICARBOXYLATE TRANSPORTER 2.1, CHLOROPLASTIC 65 558 IPR030676 -
Vium2895g00017 558 NCBIfam DASS family sodium-coupled anion symporter 110 552 IPR001898 GO:0016020|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2895g00017 Vium-Chr2895 93619 97129 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2895g00017 33 557 Antiporters AT5G12860 82.243 0.0 848
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2895g00017 - - gmx:100796365 976.467