Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2895g00014 ATGGGAGCTCGTTGCTCTAAATTCTCTCTCTGCTGGTGGCCTTCCCACGTCAAATCAAACCTCCATGATTTGTCTGATAATGATGATGATGGGAAGAGGAATGAGAAGGATCCTTGGGGAGGGTTCAGTGAGTACAGTTTGGATCAGCTGAGAGTTGCCACCTCAGGATTCTCACCAGACAACATTGTCTCGGAACACGGTGAGAAGGCTCCAAATGTTGTCTACAAAGGGAGGCTTGAGGACGATAGGACGGTTGCTGTGAAGCGCTTCAATAAGTCTGCTTGGCCTGATTCTCGACAATTCCTAGAGGAGGCACGTGCTGTGGGGCAACTGAGGAGTGAAAGATTGGCTAACTTGGTTGGGTGTTGCTGTGAGGGAGAAGAGAGATTGCTTGTTGCAGAGTTCATGCCCAATGAAACTCTCTCTAAACACCTTTTTCATTGGGAAGCCCAGCCTATGAAATGGGCAATGAGGCTGAGGGTGGCCTTGTATTTAGCTCAAGCTTTGGAATACTGCAGCAGTAAAGGAAGGGCATTGTACCATGATCTTAATGCTTATAGAATTTTGTTTGATCAGGAAGGCAACCCTAGACTCTCTTGTTTTGGACTCATGAAAAACAGTAGGGATGGCAGAAGCTATAGTACAAATTTAGCCTTCACACCTCCAGAGTACTTGAGGACAGGAAGAATCACTGCTGAAAGTGTAGTTTACAGTTTTGGCACCCTATTACTTGATCTTCTCAGTGGAAAGCATATCCCACCGAGTCATGCACTTGATCTTATACGAGGCAAAAATTTTCTGTTGCTAATGGACTCATGTTTGGAAGGTCATTTTTCAAATGATGATGGAACTGAGTTAGTGAGATTAGCTTCGCGCTGTTTACAGTATGAACCTCGTGAGAGACCAAATGTTAAGTCGCTCGTGACTGCTCTGACCCCTCTTCAGAAAGAAACTTCGGTACCGTCATATGTTTTAATGGGCATACCAGATAGGAGTCTGTCATCAAAGGAAACAGTTTCATTAACACCTTTTGGTGACGCTTGTTCCAGAAGAGATCTGACTGCAGTACATGAGATTTTGGATAAAGTGGGCTACAAGGATGATGAAGATGTTGCTAATGAGCTTTCCTTTCAAATGTGGACAAATCAAATACAAGATACTCTAAATTCTAAGAAGCAAGGCGATTCTGCTTTCCATGCTAGAGACTTCTCTACAGCCATTGACTGCTATACACAATTCATCGATGGTGGAACCATGGTATCACCTACCGTGTATGCCAGACGCTGCTTATGCTATCTGATGAATGACATGGCTCAAGAGGCACTTGGAGATGCCATGCATGCTCAATCAATATCTCCAACCTGGCCCACTGCATACTATCTTCAAGCAGCTGCTCTCTTCAACCTTGGCATGGACAATGATGCACAGGAAAGTCTTAAAGATGGAACAACACTGGAAACCAGGAAGTATAGAAACTGA 1479 0.4435 MGARCSKFSLCWWPSHVKSNLHDLSDNDDDGKRNEKDPWGGFSEYSLDQLRVATSGFSPDNIVSEHGEKAPNVVYKGRLEDDRTVAVKRFNKSAWPDSRQFLEEARAVGQLRSERLANLVGCCCEGEERLLVAEFMPNETLSKHLFHWEAQPMKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDQEGNPRLSCFGLMKNSRDGRSYSTNLAFTPPEYLRTGRITAESVVYSFGTLLLDLLSGKHIPPSHALDLIRGKNFLLLMDSCLEGHFSNDDGTELVRLASRCLQYEPRERPNVKSLVTALTPLQKETSVPSYVLMGIPDRSLSSKETVSLTPFGDACSRRDLTAVHEILDKVGYKDDEDVANELSFQMWTNQIQDTLNSKKQGDSAFHARDFSTAIDCYTQFIDGGTMVSPTVYARRCLCYLMNDMAQEALGDAMHAQSISPTWPTAYYLQAAALFNLGMDNDAQESLKDGTTLETRKYRN 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2895g00014 492 FunFam probable serine/threonine-protein kinase At5g41260 137 328 - -
Vium2895g00014 492 Pfam Protein tyrosine and serine/threonine kinase 73 311 IPR001245 GO:0004672|GO:0006468
Vium2895g00014 492 Gene3D Transferase(Phosphotransferase) domain 1 137 328 - -
Vium2895g00014 492 SUPERFAMILY TPR-like 390 488 IPR011990 GO:0005515
Vium2895g00014 492 FunFam probable serine/threonine-protein kinase At4g35230 32 135 - -
Vium2895g00014 492 FunFam probable serine/threonine-protein kinase At4g35230 385 492 - -
Vium2895g00014 492 Gene3D Phosphorylase Kinase; domain 1 31 135 - -
Vium2895g00014 492 ProSiteProfiles Protein kinase domain profile. 60 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2895g00014 492 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 11 491 IPR045845 GO:0004672|GO:0009742
Vium2895g00014 492 SUPERFAMILY Protein kinase-like (PK-like) 39 318 IPR011009 -
Vium2895g00014 492 Gene3D Tetratricopeptide repeat domain 386 491 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2895g00014 Vium-Chr2895 75008 78812 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2895g00014 45 323 Glycoside Hydrolase AT3G07070 34.405 9.21e-41 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Vium2895g00014 PK_Tyr_Ser-Thr 1.5e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2895g00014 - - gmx:732542 954.125