Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2895g00002 ATGGAAAACGGGGAAGCCCCAATCTTGGTGGAAGAGAGGATAATGCAGGAAATTGAGATACCCATTGCATCTGAAAGACTTGATGTTCTTCCTATGAAGGCAGAGTCATCGTGTTGTTCTGGCTGTCCTTTTTCTGGACATGAAAATAGTGTTGTGACATCAAAAGAGTCTTCAAAGTCGGCAAAGAAACTTTGTGGTCTTATTGTTTTCTATGGTATTGTCATGGTTGTGGAACTTATTGGTGGAATAAAAGCTCACAGCCTAGCTGTCATCGGTGATGCAGCTCACTTGCTTTCTGATATTACTGGATTCTCTATCTCTCTCTTTGCAGTGTGGGCTTCGGGTTGGGAGGCAACACCACATCAATCTTTCGGATACAATCGTCTCGAGGTTTTGGGGGCTCTTATATCTGTTCAGTTAATTTGGTTGATATCTGGTTATTTGATATATGAAGCAGTTGGTAGAATTCTTCTACAAGAGGCCAGTGTGAATGGAAAGGTCATGCTTGCTATTGCAACATTTGGATTTGTTCTTAACTTTATCATGGTTGCATGGATTGGTCATGATCACGGTCATCATCATCATCATCATCATCATCATGGTTGTGAAGACTCTGGTCATGATCACAGTCATCATCACTGCCACACAGACCATGATCATGGGAATAAGGAGCTATCTATGATAAGTGACGAGGAGAGCGTTACCCTGGTTTCAAGTAATCACAGAAATACAAATGTCTTGAACCTAAATCTTCAGGGGGCGTATTTGCATGTCATGGCTGATATGATTCAATCTGTTGGAGTGATGATTGCTGGAGCCATAATATGGGCTGAACCTAAGTGGTTTATAGTTGATCTTGTGTGCACTCTTATATTCTCTGTTTTATCTTTAAGTGCTACCCTTCCCATGCTTAGGAATATTTATGGCATTCTCATGGAAAGGACCCCAAGTGAGATAGATATCAGCAAGCTGGAAAATGGCATTAGAAATATCAAGGGAGTGCAGGATGTTCATGACTTGCACATTTGGGCTATAACTGTTGGAAAACTTGTTCTTTCTTGCCATGTAGTGGCTGAACCTGGCATAAGTTCCATTGATTTACTAGGCATGATTAAACACTACTGTGAAAAAACATATCAAATACAGCATGTAACCATACAAATTGAGTAA 1170 0.4051 MENGEAPILVEERIMQEIEIPIASERLDVLPMKAESSCCSGCPFSGHENSVVTSKESSKSAKKLCGLIVFYGIVMVVELIGGIKAHSLAVIGDAAHLLSDITGFSISLFAVWASGWEATPHQSFGYNRLEVLGALISVQLIWLISGYLIYEAVGRILLQEASVNGKVMLAIATFGFVLNFIMVAWIGHDHGHHHHHHHHHGCEDSGHDHSHHHCHTDHDHGNKELSMISDEESVTLVSSNHRNTNVLNLNLQGAYLHVMADMIQSVGVMIAGAIIWAEPKWFIVDLVCTLIFSVLSLSATLPMLRNIYGILMERTPSEIDISKLENGIRNIKGVQDVHDLHIWAITVGKLVLSCHVVAEPGISSIDLLGMIKHYCEKTYQIQHVTIQIE 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2895g00002 389 Pfam Cation efflux family 68 312 IPR002524 GO:0006812|GO:0008324|GO:0016020|GO:0055085
Vium2895g00002 389 SUPERFAMILY Cation efflux protein cytoplasmic domain-like 316 389 IPR036837 -
Vium2895g00002 389 MobiDBLite consensus disorder prediction 196 222 - -
Vium2895g00002 389 NCBIfam cation diffusion facilitator family transporter 62 389 IPR002524 GO:0006812|GO:0008324|GO:0016020|GO:0055085
Vium2895g00002 389 Gene3D Cation efflux protein transmembrane domain 60 311 IPR027469 -
Vium2895g00002 389 SUPERFAMILY Cation efflux protein transmembrane domain-like 61 313 IPR027469 -
Vium2895g00002 389 PANTHER CATION EFFLUX PROTEIN/ ZINC TRANSPORTER 35 389 - -
Vium2895g00002 389 MobiDBLite consensus disorder prediction 201 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2895g00002 Vium-Chr2895 11555 13560 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2895g00002 16 389 Inorganic Solute Cotransporters AT2G29410 48.541 1.23e-117 345
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2895g00002 K14689 - gmx:100777590 612.068