Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2890g00002 ATGGCAGCGTGCTTGAATCCACCTAGGCTATCTACCACTGAAGATGACTCTGTGATACTCTTCTCAACTTCTAATTCTCCTGAGGAATCCATTAGTGCTTCTTCTTCCTCTTTCCACCACTCACCGCCACCATCACAGCAACAATTCAGAACTGCATATAAACTTTCTGTGAGAAATCTCTCCTACACTTTGAAGCCTAACAAGAGAACTTTCCTTTCATTTTGTCACCAGAGTAAAAAACCAGAGCCCTTAAGTATACTCAACTCAATCTCTTTTGTTGCCAGAAGTTCTGAGATTGTTGCTGTAGCTGGTCCTAGTGGAACAGGAAAATCTACCCTTCTGCGAATCATGGCAGGAAGGGTAAAAGATGAAGACTTTGATCCTAAAAGTATTTCAATCAATGATCAGCCTATGACTAGTCCAGCTCAGTTGAGAAAGACATGCGGCTTTGTGGCACAAGAGGACAATTTGCTTCCTATGCTGACTGTGAGAGAAACTTTGTTGTTTAGTGCAAAGTTTAGGCTAAAAGAAATGACCCCAAAAGATAGAGAGTTGAGGGTAGAAAGCTTGTTGCAAGAGCTAGGACTTTTACATGTTGCTGATAGTTTTGTTGGGGATGAAGATAATAGAGGGATATCTGGTGGAGAGAGGAAAAGGGTGTCAATTGGAGTTGACATGATTCACAATCCTCCAATTTTGCTCCTAGATGAGCCAACTTCAGGTCTAGACAGCACTTCAGCTTTGCAAGTCATTGAGTTACTGTCATCAATTGTTAAGGCAAATCATAGGATAGTGGTTCTTTCAATCCACCAACCCAGCTATAGAATATTGCAGTATGTTTCCAAGTTCTTGATCCTCTCTCATGGTTCAGTTGTTCACAATGGTAGCCTAGAACAACTAGAGGAAACCATAAGTAAATTGGGATTTCAAATCCCAACACAGCTGAATGCTTTAGAATTCTCTATGGAAATTATACGAGGGTTGGAAGATTCCAGTTCCAAATATGAATCTTCCATCATTGAGGAAAAGGAGCCATTTCCACACCTCCTGTGGCCAGAGGAAGAAAACTGTGGTGGAGTCCAAATTGTCCAATCACAGTTTATCAAGGAAAGTTTCAGCAGTCTTTGCTATGCATACTTGATAGAGATACTGGTTTTGTGCTCAAGATTTTGGAAGATCATTTATAGAACAAAACAACTTTTCTTGGCCAGAACAATGCAAGCACTAGTTGGTGGCTTTGGTCTAGGAAGTGTTTATATAAAGGTAACAAGGGATGAAGAAGGAATTGCAGAAAGATTAGGTCTATTTGCATTCAGTCTTAGTTTTCTCCTCTCTTCTACAGTTGAAGCACTTCCAATATACCTTCAAGAGAGGAGTGTTTTGATGAAAGAAGCCTCAAGGGGAGCCTATAGGATTTCCTCTTACATGATAGCCAACACTTTTGTTTTCCTTCCTTTCTTGTTTGTGGTATCCACACTTTTTGCTGTTCCTGTGTACTGGCTTGTAGGCCTCAACCCTTCTCTTTCTGCCTTCTCCTTCTTCACTTTTGTGGTGTGGCTCATTGTGCTCATGGCAAGTTCTCTTGTGCTCTTCTTAAGTGCAGTGTCTCCTGATTTCATTTCAGGGAACTCTCTCATCTGCACAGTTCTTGGAGCCTTCTTCCTCTTCTCAGGATACTTCATTCCAAAGGAAAGCATCCCAAAGTATTGGCTTTTCTTGTACTATGTGTCCCTCTATAGGTACCCTTTGGATGCACTCCTCACAAATGAGTACTGGAATGTTAGAAATGAGTGCTTCTCTCATCAAATAGAGGGATCACAGTGCTTGATCACAGGGTTTGATGTGTTGAAGAGTAGAGGACTTGAAAGGGATAACAGGTGGATCAACGTGGGAATAATGCTGGCATTCTTTCTGTTGTATCGTGTGCTTTGTTGGATAATTCTTGCAAGAAAGGCCTCCAAAACAACAATATAA 1974 0.4113 MAACLNPPRLSTTEDDSVILFSTSNSPEESISASSSSFHHSPPPSQQQFRTAYKLSVRNLSYTLKPNKRTFLSFCHQSKKPEPLSILNSISFVARSSEIVAVAGPSGTGKSTLLRIMAGRVKDEDFDPKSISINDQPMTSPAQLRKTCGFVAQEDNLLPMLTVRETLLFSAKFRLKEMTPKDRELRVESLLQELGLLHVADSFVGDEDNRGISGGERKRVSIGVDMIHNPPILLLDEPTSGLDSTSALQVIELLSSIVKANHRIVVLSIHQPSYRILQYVSKFLILSHGSVVHNGSLEQLEETISKLGFQIPTQLNALEFSMEIIRGLEDSSSKYESSIIEEKEPFPHLLWPEEENCGGVQIVQSQFIKESFSSLCYAYLIEILVLCSRFWKIIYRTKQLFLARTMQALVGGFGLGSVYIKVTRDEEGIAERLGLFAFSLSFLLSSTVEALPIYLQERSVLMKEASRGAYRISSYMIANTFVFLPFLFVVSTLFAVPVYWLVGLNPSLSAFSFFTFVVWLIVLMASSLVLFLSAVSPDFISGNSLICTVLGAFFLFSGYFIPKESIPKYWLFLYYVSLYRYPLDALLTNEYWNVRNECFSHQIEGSQCLITGFDVLKSRGLERDNRWINVGIMLAFFLLYRVLCWIILARKASKTTI 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2890g00002 657 Pfam ABC-2 type transporter 270 337 IPR043926 GO:0140359
Vium2890g00002 657 Pfam ABC transporter 87 240 IPR003439 GO:0005524
Vium2890g00002 657 ProSitePatterns ABC transporters family signature. 212 226 IPR017871 GO:0005524|GO:0016887
Vium2890g00002 657 SMART AAA_5 96 283 IPR003593 GO:0016887
Vium2890g00002 657 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 31 642 - -
Vium2890g00002 657 Pfam ABC-2 type transporter 383 591 IPR013525 GO:0016020|GO:0140359
Vium2890g00002 657 FunFam ABC transporter G family member 23 78 311 - -
Vium2890g00002 657 Gene3D - 70 319 IPR027417 -
Vium2890g00002 657 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 72 306 IPR027417 -
Vium2890g00002 657 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 55 313 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2890g00002 Vium-Chr2890 16463 18682 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2890g00002 80 300 Calmodulin-binding Proteins AT2G36910 27.273 5.98e-13 70.5