Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2890g00001 ATGACAAACAACTCCATGCCAATCTCAGTATGCGGAGACTCAGATTGCGAATCCTCTTGGGACCACCAAACTAGCTCCTCTCATTGTCCTCACCTTCCATCGCTACCACCACCGACCACAAACCAACAATGGCAGAATCTCCCTCTTGCTACTCCACCCTCAAAGAAGCCACGTGGCAGACCTCCAGGCTCCAAGAACAAGCCCAAATACACTCTCCCACAACCCTCCATAAAGATTCTCATTGTCAATGTCGCTCCAGGACATGACATCATTGAAACCATTATTAACATCGCTCGGCGCTCCCATGTCAGCCTCTCCATCCTTAGTGCCTCCGGTATCATCACCACCGTCACCCTCCGCCATGTCCCCAGTGGTTCCTCCGCCGTCATGCTCCATGGACCCTTCAACTTACTTTCCCTCACTGGCTCCTACTTACACAATAACCAATACTCCCTTCTCCCCGGAGCCACCCCTCCTCGTTCCTTATCCTTTGGCATACACCTCTCCACCTCTCATGGTCGAGTCTTCGGTGGCCTCGTCGGCGGTAGGGTCGTCGCCGGTGACGATGTCATTTTGACTATTTCTACCTTCGAGAACCCTGAAATTTATAAATACGGTTTTGAAGATCAAGAAAGAGGTGATCATGATGACAGTAACATCAACAACAATAAAACTTGTGACCATAACCCTAGTAATTTCAACAAGGGTGGCGACTTGCCAACGTATAACTCTGCTAATTTCGGAATCCATGGGTGGTGA 759 0.4967 MTNNSMPISVCGDSDCESSWDHQTSSSHCPHLPSLPPPTTNQQWQNLPLATPPSKKPRGRPPGSKNKPKYTLPQPSIKILIVNVAPGHDIIETIINIARRSHVSLSILSASGIITTVTLRHVPSGSSAVMLHGPFNLLSLTGSYLHNNQYSLLPGATPPRSLSFGIHLSTSHGRVFGGLVGGRVVAGDDVILTISTFENPEIYKYGFEDQERGDHDDSNINNNKTCDHNPSNFNKGGDLPTYNSANFGIHGW 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2890g00001 252 Gene3D - 76 216 - -
Vium2890g00001 252 MobiDBLite consensus disorder prediction 209 237 - -
Vium2890g00001 252 ProSiteProfiles PPC domain profile profile. 73 221 IPR005175 -
Vium2890g00001 252 MobiDBLite consensus disorder prediction 1 71 - -
Vium2890g00001 252 SUPERFAMILY AF0104/ALDC/Ptd012-like 76 200 - -
Vium2890g00001 252 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 40 231 IPR014476 GO:0003680
Vium2890g00001 252 MobiDBLite consensus disorder prediction 223 237 - -
Vium2890g00001 252 MobiDBLite consensus disorder prediction 1 30 - -
Vium2890g00001 252 Pfam Plants and Prokaryotes Conserved (PCC) domain 79 199 IPR005175 -
Vium2890g00001 252 CDD DUF296 78 193 IPR005175 -
Vium2890g00001 252 FunFam AT-hook motif nuclear-localized protein 17 76 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2890g00001 Vium-Chr2890 11167 11925 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2890g00001 55 212 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 33.735 2.60e-24 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2890g00001 - - pvu:PHAVU_006G013800g 355.525