Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2888g00004 ATGAAAGGGGGGCGATCGCATCGCCCTCAGAGCTCTGACCCACCGGATGAGTGGGTGGACGGGTCGTGGACGGTGGATTGCATCTGCGGCGTGACCTTCGATGACGGCGAGGAGATGGTGAAGTGCGACGAGTGTGGCGTGTGGGTCCACACGCGCTGCTCTCGGTACGTGAAGGGCGACGACACCTTCGCCTGCGACAAGTGCAAGGCCAGGCACAACAACAACCCGGAGGAGACCGAGGTGGCGCAGTTCCTCGTGGAACTCCCCACCAAAACCATCTCCATGGACAACAAAAAGGCCCTACCGTCTCGGCCCAGGCTTTGGACCGATAAGCCCATCCAGGAGCGGGTCCACGTCCAGGGCCCACCCGGAGGCGACCCTTCCATCTTTTCCGCCACCTCCGTCTCCTCGATTTTCTCCCCTCACCTCTGGAAGGCCTGCGGGTACGTTCCCAAGAAGTTTAATTTCCAGTACAAGGAGTTTCCCTTCTGGAGCGATAACGATGATGATAAGGATAACGTTAACGAGAGTTTACAAGCACAAACAGAAGCTCAACCACAGGCACAAGATAACAACAAGAACGGGGCTGGGGCTCTTGTTTATTTGTCTAAAGACGGTGATAATAATGGTGATGCTCTTGTGTTGGACCCTTCCTCTGTTGATGCGAGATCTGGTCACGCCAAGGAAACCGAAACGGGCAAGTTTGGGAGCGAGGATGTGCCGCCTCGTGTCCACAGTGAGGTGAAGAAAGAGAGTACTCTGCTCAGACCTCCTGTTGTTCATAACAGTAAGCGCAGCAAAGGGGATTTCGGGTCTTCAAATTCAAAAGACCGGAGCGGGAAGAAGCGGGCTAGGTCTACTTCTGACAGAGAGGTGGATCCCAGGAGGAGAACTCTGCATTCTTCTAAATCAGTATTTACAACCACTGGTGATGCAAAACAAGCGGACTTTTACGAGGACAGAGGACCAAAGATTTTAAAGACTGACACTAGGAGCATAAAGAATAAAAACTTAAAAGAGACCGTTGTTCAAGAATGTGTTTCTGATGATTATTTGGCTGCTGATACCATCATGGAGGAGCCAAATAATAACTTAGCAACTACGGAGGACTCTTCGGAACCATTATATCCTGACACGACTAGGCATGGTGTTTCTGTTGTAGACGTTCCAGCAGAAGAGAAGCCTAATCATAAACCTCCTACTGTGGTGGAGATGTCTTCTAAGACTGACGATGCTGTTACATCGGCTTTAAAGCAGAATAATGTTGGAAATGCTTCAGCTAAAGAAAAGGATGGGGATTGCTCAGTAGCTGATAATGCAGATGATAGTTTAGTAGTCAGAAGTGCTGCAAGTCCTCACGCAGAAGGTTATTGCGGTTCTGCACCAGAACTTGCAGATAACCAATTTTCACAAGAAATTGACCGCAACAAGCGTACAAGCTCTACAAAATGCAAAGTTAAGATGAAGAGGGAAGACGACATTGATAATTTTAAGAAGCCCTCAATTTTTCATCCTTCTCCTATCAGTGATCTTAAAAACAATGAAAAACTATCTGATCACAAATCTGATGTTGAAGTGAATGATGCACCAGTTCCTAGTTTACCATCATGTGAAAATAAGGTCGGCAGTGTTGACATTTCATCAGAAGTAATCCCTGCTGATTATATCAATAAGCCCAATGAATTTTCTGGTGATATTTGTCCTAGAAAGCAAGAACAGGAGGGTTATGAAGGTTCCTTGGAAACACAAAAGGTATTTTCTGAAATCAAAGATGGTTCAGATTCTGTTAAAGATCCTTCAAAATCTGAAGCACTTGGATGTCCAGCTAAAGTGCTAGCATGTGTTGGAAAGTCATCTCCAACTTCGTCAACCATGAACTCCAAATCATTGGGTCATGATATCAAATCTGAAGATACCGAAACAGCTAATCCTTTTACGAAGCATGGAGCGATGACTGATTCTAGTGTTCAGATAAAGAATGAAAACTGTACAAGTAATGTTGCCAGGGATGAAAATCCAAAGAAGTCTGTAAGAGAGCGACCAAAATCCTCCTTGAATTCCAATTCAAAGGGATTGCATTCAAGCAGGAGTGTGCATAATTCTGTCTCCAAGCAAGCAAATTCAGACGTAAGGGATTCTGTTCCAGTATCTTCCAAGTCTTTGATACATCAGACTTCAAGTATATCAGGCTCTAGTGAGCCCAATGTATCATTGCACAATCAGAAGGTTCAAGTGCAGAATAAGATTTCATCTTCAGCACCACAGAAAGTTGAAAAAGTTAACCAAACAAGCATTGCCACTTCCTCTAAGTTGAACCAAGGTCATGTGACATCAATGAATCCTTCTCCAATATCAAATTCTTCAATGTTGAGTGATGAAGAGCTCGCTCTGTTATTGCACCAAGAACTGAATAGTTCACCCCGTGTACCCCGAGTACCCCGAGCACGCCATGCAGGTAGCTTGCCCCAGCTGAGTTCTGCTAGTGCTACAAGCATGCTAATGAAGCGAACATCAGGTGGAGGAAAGGATCATTATTTGGTATCTAGACGAAAACACAAGGATGCATCTAGAGATGGGTCTGGCAGTTCTCGTGAGCTGGAAGATGAAGCTAAAAAGGTAGAGAAGGAGAAGGGTCCAACCTCTTCTGATCAGAGGAAACAAGATATGTCATATATGGAGGATGCTCCTGCGAGGGAAGAAGGCCCTGCATCTATGACAGCAGCAAACTCAATCACAAACAACATTGTTTCTTCCACGTCTGCAATAGCAAACAGTGATCCATCCTCCCCTCCAGAGGATCAGAATTTATCATCCATGCGAAACTCACCTAGGAATATCTCTGATGATGATACAGCGACTGCTGGAAGGCCAGCTCATCACACCTTACCTGGTTTAATCAATGAAATTATTATGAGCAAAGGCAGGCGCATGACATATGAGGAACTCTGTAGTGCTGTGCTACCGCACTGGCATAACTTGAGGAAACACAATGGAGAGCGTTACGCATACTCAAGTCACTCCCAGGCTGTTCTTGATTGTTTGAGGAACCGGCAAGAATGGGCAAGACAAATTCTAATAGAAAAAGGCGTAAGCTGGAGGCTGAAGAATCTGATGATAATGGATATGGCAAGGGAAGAACTGCAAAAGAGACCGAAGGGAAGAACTTTGAGTTGCAAAAGGAAGAGTTTCCCAAAGGCAAGCGTAAAGCTCGAAAACGCAGACGCCTTGCTCTTCAGGGAAGAGCAGTGA 3249 0.4568 MKGGRSHRPQSSDPPDEWVDGSWTVDCICGVTFDDGEEMVKCDECGVWVHTRCSRYVKGDDTFACDKCKARHNNNPEETEVAQFLVELPTKTISMDNKKALPSRPRLWTDKPIQERVHVQGPPGGDPSIFSATSVSSIFSPHLWKACGYVPKKFNFQYKEFPFWSDNDDDKDNVNESLQAQTEAQPQAQDNNKNGAGALVYLSKDGDNNGDALVLDPSSVDARSGHAKETETGKFGSEDVPPRVHSEVKKESTLLRPPVVHNSKRSKGDFGSSNSKDRSGKKRARSTSDREVDPRRRTLHSSKSVFTTTGDAKQADFYEDRGPKILKTDTRSIKNKNLKETVVQECVSDDYLAADTIMEEPNNNLATTEDSSEPLYPDTTRHGVSVVDVPAEEKPNHKPPTVVEMSSKTDDAVTSALKQNNVGNASAKEKDGDCSVADNADDSLVVRSAASPHAEGYCGSAPELADNQFSQEIDRNKRTSSTKCKVKMKREDDIDNFKKPSIFHPSPISDLKNNEKLSDHKSDVEVNDAPVPSLPSCENKVGSVDISSEVIPADYINKPNEFSGDICPRKQEQEGYEGSLETQKVFSEIKDGSDSVKDPSKSEALGCPAKVLACVGKSSPTSSTMNSKSLGHDIKSEDTETANPFTKHGAMTDSSVQIKNENCTSNVARDENPKKSVRERPKSSLNSNSKGLHSSRSVHNSVSKQANSDVRDSVPVSSKSLIHQTSSISGSSEPNVSLHNQKVQVQNKISSSAPQKVEKVNQTSIATSSKLNQGHVTSMNPSPISNSSMLSDEELALLLHQELNSSPRVPRVPRARHAGSLPQLSSASATSMLMKRTSGGGKDHYLVSRRKHKDASRDGSGSSRELEDEAKKVEKEKGPTSSDQRKQDMSYMEDAPAREEGPASMTAANSITNNIVSSTSAIANSDPSSPPEDQNLSSMRNSPRNISDDDTATAGRPAHHTLPGLINEIIMSKGRRMTYEELCSAVLPHWHNLRKHNGERYAYSSHSQAVLDCLRNRQEWARQILIEKGVSWRLKNLMIMDMAREELQKRPKGRTLSCKRKSFPKASVKLENADALLFREEQ 1082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2888g00004 1082 MobiDBLite consensus disorder prediction 807 903 - -
Vium2888g00004 1082 PANTHER UNCHARACTERIZED 1 1022 - -
Vium2888g00004 1082 MobiDBLite consensus disorder prediction 682 758 - -
Vium2888g00004 1082 MobiDBLite consensus disorder prediction 616 630 - -
Vium2888g00004 1082 MobiDBLite consensus disorder prediction 821 835 - -
Vium2888g00004 1082 MobiDBLite consensus disorder prediction 180 309 - -
Vium2888g00004 1082 MobiDBLite consensus disorder prediction 842 895 - -
Vium2888g00004 1082 MobiDBLite consensus disorder prediction 360 411 - -
Vium2888g00004 1082 MobiDBLite consensus disorder prediction 496 540 - -
Vium2888g00004 1082 MobiDBLite consensus disorder prediction 360 374 - -
Vium2888g00004 1082 MobiDBLite consensus disorder prediction 920 960 - -
Vium2888g00004 1082 ProSitePatterns Zinc finger PHD-type signature. 27 68 IPR019786 -
Vium2888g00004 1082 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 76 IPR013083 -
Vium2888g00004 1082 SMART PHD_3 26 69 IPR001965 -
Vium2888g00004 1082 MobiDBLite consensus disorder prediction 222 254 - -
Vium2888g00004 1082 MobiDBLite consensus disorder prediction 180 196 - -
Vium2888g00004 1082 MobiDBLite consensus disorder prediction 270 300 - -
Vium2888g00004 1082 MobiDBLite consensus disorder prediction 643 670 - -
Vium2888g00004 1082 SUPERFAMILY FYVE/PHD zinc finger 15 73 IPR011011 -
Vium2888g00004 1082 MobiDBLite consensus disorder prediction 615 758 - -
Vium2888g00004 1082 MobiDBLite consensus disorder prediction 561 580 - -
Vium2888g00004 1082 MobiDBLite consensus disorder prediction 920 949 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2888g00004 Vium-Chr2888 31546 43067 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2888g00004 25 68 PHD Transcription Factor Family AT5G22260 44.681 3.48e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2888g00004 - - gmx:100810855 1576.99