Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2885g00005 ATGGAGATAATAACACCAACGCCACCACCAACAGCCGTCACTACCACAAACGCCGCCCCCAAATCGCCGGAACTCGACATAGAGACTCCCACCCGGATCCATCAAGCCGCAGGAAACCCGAATCCCAGTCCAAAGCCGGTGTCTTTCTCCAACGGGGTCTTGAAGCGCCACCATGCAAACAACCGCACCGCCGCCCCGGTGGTTTACAAGGAATGCTTGAAGAACCACGTCGCCAGCTTAGGCGGCCACGCCCTCGACGGCTGCGGCGAGTTCATGCCGTCGCCCGCGGCAACCGCCGACGACCCCAGCTCCATCAAATGCGCCGCATGCGGCTGCCACCGTAACTTCCACCGCCGCGAGCCAGAGGAGCCGCCAATTTCTCCGGCGACGCATCATGTTCTGGAGTACCAGCCCCACCACCGTCACCACCCTCCTCCGCCACCGCCGCACCGGAGTCCGAATTCCTCCTCTCCGCCGCCGATCTCCTCCTACCCCTCCGCACCCCACATGCTCCTCGCCCTCTCCAGCGGCGGCGGCCTCTCCGTGGCCCCGGAGAACACCGCCGCGCCGGCTCTGGCGCACCACTCCCGGAAGCGCTTCCGCACGAAATTCACCCAGGAGCAGAAGGAGAAGATGCACGAGTTCGCCGACAAAGTGGGGTGGAAGATGCAGAAGCGCGACGAAAACATGGTCATGGAGTTTTGCAGCGAGGTTGGTGTCGACAGAGGAGTCCTCAAAGTGTGGATGCACAACAACAAGAACACTTTTGCCAAAAAGGACAACCTCAATGGTAGCCCTGCTAACGGGACTAACCATGTCGCCTCTCCAAACAAAGCTACCGTCAGAAGCAACGTTAACGGCCTCGAACAGGAACACGGCGGCGGAATCAACGGTAACAGCGACCACGACCACAACCACAACCTCGGTTCTTCTCATGATGTGAACGAGTACGATAATGACAGTGGAACAAATGGTGGTGGAACAAACGGGTCTTCTTCTTCTTAA 1005 0.595 MEIITPTPPPTAVTTTNAAPKSPELDIETPTRIHQAAGNPNPSPKPVSFSNGVLKRHHANNRTAAPVVYKECLKNHVASLGGHALDGCGEFMPSPAATADDPSSIKCAACGCHRNFHRREPEEPPISPATHHVLEYQPHHRHHPPPPPPHRSPNSSSPPPISSYPSAPHMLLALSSGGGLSVAPENTAAPALAHHSRKRFRTKFTQEQKEKMHEFADKVGWKMQKRDENMVMEFCSEVGVDRGVLKVWMHNNKNTFAKKDNLNGSPANGTNHVASPNKATVRSNVNGLEQEHGGGINGNSDHDHNHNLGSSHDVNEYDNDSGTNGGGTNGSSSS 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2885g00005 334 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 69 120 IPR006456 -
Vium2885g00005 334 Gene3D - 183 258 - -
Vium2885g00005 334 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 45 255 - -
Vium2885g00005 334 NCBIfam homeobox domain, ZF-HD class 197 254 IPR006455 -
Vium2885g00005 334 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 69 120 IPR006456 -
Vium2885g00005 334 MobiDBLite consensus disorder prediction 314 334 - -
Vium2885g00005 334 SUPERFAMILY Homeodomain-like 187 258 IPR009057 -
Vium2885g00005 334 FunFam Zinc-finger homeodomain protein 2 185 258 - -
Vium2885g00005 334 MobiDBLite consensus disorder prediction 256 287 - -
Vium2885g00005 334 MobiDBLite consensus disorder prediction 256 334 - -
Vium2885g00005 334 MobiDBLite consensus disorder prediction 8 22 - -
Vium2885g00005 334 MobiDBLite consensus disorder prediction 148 165 - -
Vium2885g00005 334 MobiDBLite consensus disorder prediction 1 25 - -
Vium2885g00005 334 MobiDBLite consensus disorder prediction 137 169 - -
Vium2885g00005 334 Pfam ZF-HD protein dimerisation region 67 121 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2885g00005 Vium-Chr2885 69204 70675 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2885g00005 13 301 ZF-HD Transcription Factor Family AT3G28920 51.974 1.91e-74 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vium2885g00005 ZF-HD_dimer 7e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2885g00005 - - gmx:100814730 457.603