Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2885g00003 ATGGCTGCAATATCATGTTCCTATGCCTTCTCCCATGATGTGTTCCTCAGCTTTAGAGGCTCAGACACACGCCATGGTTTTGTTGGGAATCTTTACAAAGCTCTTGATGACAAGGGAATCCATACTTTCATTGATGATGAGAAGCTTCAGAGAGGAGAGGAAATAACACCTGCACTTATGAAGGCAATTGAAGAGTCTAGGATTGCCATCACTGTGCTCTCTCACAACTATGCTTCTTCATCATTTTGTTTAGATGAACTTGTTCATATCATTGCTTGTGCTAAGGAGAAAGGCTTGTTGGTTTTGCCTGTTTTTTATGACTTAAATCCTTCTGATGTAAGACACCAGAAAGGTAGTTATGCAGAAGCATTGACAAGGCATGAGGAAAGGTTCAAAGACAAGAAGGAAAGTTTCAGCCATAACATGGAGAGGTTGGAGAAATGGAAGATGGCTTTGCATCATGTGGCTAGCTTGTCTGGCTATCATTTCAAACAAGGATATGAATATGAATATGAGTTTATCAGAAGGATTGTTGAGTTGGTCTCTAGCAAGATTAATCGAACTCCTTTACATGTTGCGGATTACCCGGTTGGATTAGAGGCACAAATGGTAGAAGTGATGAAGCTTTTGGATGTTGGAACTGATGATGGTGTTCACATGGTTGGGATCCATGGAATTGGTGGAATAGGAAAAACAACACTTGCTCTTGCAATTTATAATTTGGTTTTTGACCATTTTGATGGTCTGTGTTTTCTTGAAAACGTGAGAGAAAACTCAGACAAACATGGATTACAAAATCTCCAAAGCATTCTTCTTGCAGAGTTGGTTAAAGAAAAGAGAATAAACATAGCAAGTGTACAAGAAGGAATTTCAATGATACAACATAGGCTGCAACGAAAGAAGGTTCTCTTGATAGTAGATGATGTTGACAAGCATGAGCAGATGCAAGCTATTGTTGGAAGATCTGACTGGTTTAGTTCAGGCAGCAGAATCATCATAACGACTCGAGATGAACAGCTGCTAGCATCTCATGAGGTTAAAAGAATGTATGAGGTGAAGGAATTGAACAAGAAGGATGCTCTTCAATTACTTACATGGAAAGCTTTTAGAACTGATGAAGCTGATCCAAGTTATGAGGAGGTCTTGAAACGTGTGGTAGCTTATGCTTCTGGCCTTCCATTGGCTTTGAAAGTAATAGGTTCCAACTTGTTTGGAAAAGGTATAGAAGAATGGAAATCTGCGATCAAACAATATGAAAGAATTCCTAATAACCAAATCCTGAAGATACTTAAAGTAAGCTTTGATGCTTTGGAGGAAGAAGAGAAGAATGTTTTTCTTGACATTGCTTGTTGCTTCAAGGGATATGAATTGGAAGAGGTCCAAGATATACTTCATGCACATTATGGTGATTGCATGAAATATCATATTGGGGTGCTAGTTGATAAATCTCTCTTAAAGTTTAATATGCAATGTATGATGGTGACCATGCATGACTTGGTAGAGGACATGGGTAAAGAAATTGTACGAAAGGAGTCACCAAAAGATCCAGGCAAACGTAGCAGATTATGGTTGCATGAGGATATAATACAAGTTTTAGAAGACAACACAGGAACTAGTGAAATCGAAATCATACATTTGGATTTTCCCCTACTTGACAAAGAAGAAATGGTAGAATGGAACAGAAAGGCCTTCAAGAAGATGAGAAACCTCAAAACACTAATTATTAAAAGTGGTAACTTTTCTGCAGGTCCCAAATATCTTCCAAATAGTCTAAGAGTATTAGAATGGTGGAGATATCCTTCACATGATTTACCATCAGATTTTCATTCAAAGAAACTTGACATGTGAAAATTACCTCAGAGTTGCTTTACATCACATGAGCTGGTTAGCTTATTGAAGAAGTTCATGGGTATGAGATTTTTAAATTTGGACAAAAGCAAATCTTTAACACAGATACCTGATGTATCTGGTCTCCCAAATTTAGAGAAACTTTCATTTCAACATTGTCAGAATTTAACTGCAATTCACAATTCCATTGGCTTTCTATGTAAACTCAAAATATTGAGTGCTTTTGGCTGCACCAAACTCGTGAGTTTTCCACCTATCAAGTTGACTGCTCTTGAAAAGCTCAATCTCTCACGTTGTTACAGTCTTGAAAACTTTCCAGAAATATTAGGAAAGATGGAAAACATAAGGGAACTTCAGTTAGAGTACACAGCCATAAAAGAATTTCCATATTCTTTTCAAAATCTTACACGGCTTCAAAAGTTACAACTATCAAACTGTGGAGTTGTTCGATTACCGAGTAGCATTGCTGTGATGCCAGAACTGACTGATCTTATTGGTTGGAAATGGAAAGGGTGGCAATGGCTGAAACAGGAAGAGGATGAAGAAAAAGAGGGATCATCTATAGTATCTTCAAATATAGAATATCTTTGGGCCTCAGAATGCAACCTGTGTGATGATTTCTTTTCAATCGGTTTCATGAAATTTGCTCATGTGAAAGACTTAGACTTATCAAAGAACAATTTCACAATGCTACCTGAATGCATCAAAGAGTTTCAATTTTTAAGGAAGCTTAATGTGAGTGATTGCAAGCTTCTTCAGGAAATTAGAGGGATTCCACAAAGCTTGAAACATTTCTTAGCAACAAATTGTAAATCCTTGACTCCCTCAAGTACAAGCATGTTCCTAAATCAGGAACTACATGAGGCTGGAAAAACTCAGTTTTATTTACCAGGAGAAAGGGTTCCAGAATGGTTTGATCACCAAAGTAATGGACCTTCAGTTTCTTTCTGGTTTCGTAATAGGTTTCCTGAGAAGGTTCTTTGTCTTGTTATTGGACCTGTGAATGACTCTGGAATGTTTAGGCCTATGGTAGTCATCAATGGCAATAAATGTTTTCTTGGTAGTGACTATTTCATGATGGGAATGGATCATACATATATTTTTGATCTTCTAACAATAAAGTTTGAAGATAACTTATATGGAGTTCCTTTAGAAAATGAATGGAACCATGCTGAAGTTAAATACGTAGGTCTGGAAGAGACATCAATCCTTAAACAAAGTGGAATTCATGTTTTCAAACAAGAAAGTGGCCTGGAGGCTGTTTGGTTTTCTGATCCTTATGGCAAGAGAAAATTAGAAGATGATCTCAATAGTTTTGAATCACAAAACCAACAACTGCTAAAAAAGCATAGGTTTGTGGACATGGAAGCTTATACATGA 3228 0.3721 MAAISCSYAFSHDVFLSFRGSDTRHGFVGNLYKALDDKGIHTFIDDEKLQRGEEITPALMKAIEESRIAITVLSHNYASSSFCLDELVHIIACAKEKGLLVLPVFYDLNPSDVRHQKGSYAEALTRHEERFKDKKESFSHNMERLEKWKMALHHVASLSGYHFKQGYEYEYEFIRRIVELVSSKINRTPLHVADYPVGLEAQMVEVMKLLDVGTDDGVHMVGIHGIGGIGKTTLALAIYNLVFDHFDGLCFLENVRENSDKHGLQNLQSILLAELVKEKRINIASVQEGISMIQHRLQRKKVLLIVDDVDKHEQMQAIVGRSDWFSSGSRIIITTRDEQLLASHEVKRMYEVKELNKKDALQLLTWKAFRTDEADPSYEEVLKRVVAYASGLPLALKVIGSNLFGKGIEEWKSAIKQYERIPNNQILKILKVSFDALEEEEKNVFLDIACCFKGYELEEVQDILHAHYGDCMKYHIGVLVDKSLLKFNMQCMMVTMHDLVEDMGKEIVRKESPKDPGKRSRLWLHEDIIQVLEDNTGTSEIEIIHLDFPLLDKEEMVEWNRKAFKKMRNLKTLIIKSGNFSAGPKYLPNSLRVLEWWRYPSHDLPSDFHSKKLDMXKLPQSCFTSHELVSLLKKFMGMRFLNLDKSKSLTQIPDVSGLPNLEKLSFQHCQNLTAIHNSIGFLCKLKILSAFGCTKLVSFPPIKLTALEKLNLSRCYSLENFPEILGKMENIRELQLEYTAIKEFPYSFQNLTRLQKLQLSNCGVVRLPSSIAVMPELTDLIGWKWKGWQWLKQEEDEEKEGSSIVSSNIEYLWASECNLCDDFFSIGFMKFAHVKDLDLSKNNFTMLPECIKEFQFLRKLNVSDCKLLQEIRGIPQSLKHFLATNCKSLTPSSTSMFLNQELHEAGKTQFYLPGERVPEWFDHQSNGPSVSFWFRNRFPEKVLCLVIGPVNDSGMFRPMVVINGNKCFLGSDYFMMGMDHTYIFDLLTIKFEDNLYGVPLENEWNHAEVKYVGLEETSILKQSGIHVFKQESGLEAVWFSDPYGKRKLEDDLNSFESQNQQLLKKHRFVDMEAYT 1075
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2885g00003 1075 PRINTS Disease resistance protein signature 296 310 - -
Vium2885g00003 1075 PRINTS Disease resistance protein signature 220 235 - -
Vium2885g00003 1075 PRINTS Disease resistance protein signature 389 403 - -
Vium2885g00003 1075 PRINTS Disease resistance protein signature 702 718 - -
Vium2885g00003 1075 Pfam TIR domain 12 188 IPR000157 GO:0007165
Vium2885g00003 1075 ProSiteProfiles TIR domain profile. 10 185 IPR000157 GO:0007165
Vium2885g00003 1075 FunFam Disease resistance protein (TIR-NBS-LRR class) 9 187 - -
Vium2885g00003 1075 Pfam NB-ARC domain 201 424 IPR002182 GO:0043531
Vium2885g00003 1075 Pfam Leucine rich repeat 706 762 IPR001611 GO:0005515
Vium2885g00003 1075 Gene3D - 184 349 IPR027417 -
Vium2885g00003 1075 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 448 IPR027417 -
Vium2885g00003 1075 Gene3D - 11 183 IPR035897 -
Vium2885g00003 1075 SUPERFAMILY L domain-like 549 895 - -
Vium2885g00003 1075 SUPERFAMILY "Winged helix" DNA-binding domain 425 533 IPR036390 -
Vium2885g00003 1075 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 12 807 IPR044974 GO:0006952
Vium2885g00003 1075 Gene3D Ribonuclease Inhibitor 529 786 IPR032675 -
Vium2885g00003 1075 Gene3D Ribonuclease Inhibitor 801 907 IPR032675 -
Vium2885g00003 1075 SUPERFAMILY Toll/Interleukin receptor TIR domain 9 161 IPR035897 -
Vium2885g00003 1075 Coils Coil 1045 1065 - -
Vium2885g00003 1075 SMART till_3 11 158 IPR000157 GO:0007165
Vium2885g00003 1075 Gene3D - 354 438 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2885g00003 Vium-Chr2885 44003 48099 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2885g00003 7 780 WRKY Transcription Factor Family AT4G12020 31.219 1.23e-80 287
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2885g00003 - - gmx:100780257 1778.07