Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vium2883g00001 | GGATCTGGTTCAGATGCTTTTCGTGTCAGTGTTTCAAGTGCCCCTAGTACTTCGAGTCATGGATCTGCACCAGATGACTATGATGCCCTGGGGGATGTATACATATGGGGCGAGGTTATCTGTGATCATGTTAAAATTGGTGCTGATAAAAATGTCAATTATTTCAGCCCAAGGGCAGATGTACTTCTCCCTAGACCACTGGAAGCCAATGTAGTTTTAGATGTGCATCATATAGCATGTGGTGTTAGACATGCTTCTCTAGTCACTAGGCAAGGTGAAGTTTTTACATGGGGCGAAGAATCAGGAGGACGCCTTGGTCATGGTGTTGGGAAGAATTTGGTTCAACCTCGTCTAGTTGAAGCGTTGACTTCTACAACTATTGATTTTGTTGCCTGTGGAGAGTTTCATTCATGTGCTGTTACAATGGCTGGGGAACTATACACATGGGGTGATGGTACACATAATGCAGGGCTTCTTGGTCATGGAAGTGATGTCAGCCATTGGATACCAAAGAGAATTGCCAATTCATTAGAGGGACTTCAAATTGCATTTGTTGCTTGTGGTCCATGGCACACAGCGCTGATAACTTCAACAGGGCAGCTGTTTACATTTGGGGATGGAACATTTGGTGTCCTGGGCCATGGAAATAAGGAAAATGTTTCATATCCTAAAGAAGTGGAATCCTTGTCTGGACTGAGGACAATAGCTGTAGCATGTGGGGTGTGGCATACTGCAGCTGTTGTAGAAGTTATGGCAACACACTCCAGTACAAGTGTATCATCAGGTAAATTGTTTACTTGGGGTGATGGAGACAAAAATCGCCTTGGACATGGGGACAAGGAGGCACGTCTTAAACCAACTTGTGTGCCTGCGCTTATTGATTACAATTTTCATAAAATTGCTTGTGGACACAGTTTGACAGCAGGCCTGACAACATCTGGACGTGTTTTTACTATGGGAAGTACTGTTTATGGTCAACTTGGGAATCCCCAGTCTGATGGGAAGCTTCCATGCTTGGTTGGAGACAAGATTGCTGGGGAATGTGTTGAAGAAATTGCTTGTGGTGCGTATCATGTTGCTGTATTAACATCCAAAAATGAAGTTTATACTTGGGGGAAAGGTGCAAATGGGAGATTGGGTCATGGAGATATCGAAGATCGAAATACACCAGCTTTGATTGAAGCACTGAAGGATAGACATGTGAAATATATAGCTTGTGGTTCAAACTACTCTGCTGCCATATGCCTTCATAAGTGGGTATCTGGTGCCGAGCAGTCTCAGTGCTCTACTTGTAGGCAGGCGTTTGGCTTTACAAGAAAGAGGCATAATTGTTATAACTGTGGATTGGTCCACTGCCATTCGTGCAGTTCAAGGAAAGCATTAAGAGCAGCATTGGCTCCTAATCCCGGCAAGCCATATCGTGTGTGTGATTCTTGCTATGTAAAATTGAACAAGGTTGCTGAAGCTAGCAATAGTAATAGAAGGAATGCCTTGCCTCGTTTGTCAGGTGAAAACAAGGATAGACTAGACAAATCTGATCTGAGATTATCCAAGGCAATAATTCCTTCTAATGTGGATTTGATAAAGCAACTAGATAATAAGGCAGCCAAGCAAGGAAAGAAAAATGATACATTCTCTCTGGTACGCACCTCACAACCACCTTCTCTGCTACAGCTGAAAGATGTTGTCATGTCCACTGCTCTTGATCTGAGACGAACAGTCCCAAGACCGGTGGTTGCACCATCAGGAGTAAGTTCCAGATCTGTGTCACCTTTTTCGAGAAGAACAAGCCCCCCTCGCTCAGCTACTCCAATTCCAACAACTTCAGGACTTTCCTTCTCGAAAAGTATTTCTGATAGCTTGAAGAAGACAAATGATCTTTTAAATCAAGAAGTGCAGAAGTTACATGCTCAGGTTGAGGGCCTGAGACAGAGATGTGAACTGCAAGAATTAGAGCTTCAAAGGTCAGCAAAAAAGACTGAAGAAGCTATGTTACTGGCTGCTGAGGAATCTGCAAAATGTAAAGCTGCAAAAGAAGTTATAAAGTCACTCACAGCACAGCTCAAAGATCTAGCCGAGAAGCTTCCTCCTGGAGTTTATGATACTGAGAACATAAGACCAGCTTACCTACCAAATGGTCTTGAGCCAAATGGCATCCACTATCCAGATTCAAATGGGGAGCAGCAGCACTCCAGAGCAGAGTCAATCAGTGGCTCTAGTTTGGCTTCCATGGGACTTGAATCCTCTCTACTGAATAGAACTGCGCGGAATTCACCAGGAACCAATGGAACTAATCTTCACCAGCAAATCCGGAGCCCTGTGATCTCTAATGGGACCAATACTTATCCAGATGTTAAATTGCCAAACGGTGGTGGTGTAATTCATGCAGGTAGCGGTAGCACAGCTGATGATGGTAGGGATTCTGGGAATTTTCACAATGACGAGAGTGGTCTGAAATCAAGGAATGCTGTACCTGCTGCTAATACTAATCAAATTGAAGCAGAATGGATTGAACAATATGAACCTGGTGTCTACATAACACTTGTGGCACTGCGTGATGGAACTAGAGATCTGAAGCGAGTACGCTTCAGCCGAAGGAGATTTGGAGAGCACCAAGCAGAAACCTGGTGGTCGGAGAACCGGGACAAGGTATATGAAAGATACAATGTTCGCAGTGCAGACAAACCTGCCGGCCAGGCGGCACGTAGTTCAGAAGGGGCTGGTTCACCTGTTTCCCAAACTTAG | 2745 | 0.4441 | GSGSDAFRVSVSSAPSTSSHGSAPDDYDALGDVYIWGEVICDHVKIGADKNVNYFSPRADVLLPRPLEANVVLDVHHIACGVRHASLVTRQGEVFTWGEESGGRLGHGVGKNLVQPRLVEALTSTTIDFVACGEFHSCAVTMAGELYTWGDGTHNAGLLGHGSDVSHWIPKRIANSLEGLQIAFVACGPWHTALITSTGQLFTFGDGTFGVLGHGNKENVSYPKEVESLSGLRTIAVACGVWHTAAVVEVMATHSSTSVSSGKLFTWGDGDKNRLGHGDKEARLKPTCVPALIDYNFHKIACGHSLTAGLTTSGRVFTMGSTVYGQLGNPQSDGKLPCLVGDKIAGECVEEIACGAYHVAVLTSKNEVYTWGKGANGRLGHGDIEDRNTPALIEALKDRHVKYIACGSNYSAAICLHKWVSGAEQSQCSTCRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKPYRVCDSCYVKLNKVAEASNSNRRNALPRLSGENKDRLDKSDLRLSKAIIPSNVDLIKQLDNKAAKQGKKNDTFSLVRTSQPPSLLQLKDVVMSTALDLRRTVPRPVVAPSGVSSRSVSPFSRRTSPPRSATPIPTTSGLSFSKSISDSLKKTNDLLNQEVQKLHAQVEGLRQRCELQELELQRSAKKTEEAMLLAAEESAKCKAAKEVIKSLTAQLKDLAEKLPPGVYDTENIRPAYLPNGLEPNGIHYPDSNGEQQHSRAESISGSSLASMGLESSLLNRTARNSPGTNGTNLHQQIRSPVISNGTNTYPDVKLPNGGGVIHAGSGSTADDGRDSGNFHNDESGLKSRNAVPAANTNQIEAEWIEQYEPGVYITLVALRDGTRDLKRVRFSRRRFGEHQAETWWSENRDKVYERYNVRSADKPAGQAARSSEGAGSPVSQT | 914 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vium2883g00001 | 914 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 144 | 198 | IPR000408 | - | |
Vium2883g00001 | 914 | FunFam | PH, RCC1 and FYVE domains-containing protein 1 | 2 | 251 | - | - | |
Vium2883g00001 | 914 | MobiDBLite | consensus disorder prediction | 711 | 741 | - | - | |
Vium2883g00001 | 914 | MobiDBLite | consensus disorder prediction | 578 | 613 | - | - | |
Vium2883g00001 | 914 | Coils | Coil | 667 | 694 | - | - | |
Vium2883g00001 | 914 | ProSiteProfiles | Zinc finger FYVE/FYVE-related type profile. | 422 | 484 | IPR017455 | - | |
Vium2883g00001 | 914 | CDD | FYVE_like_SF | 427 | 480 | - | - | |
Vium2883g00001 | 914 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 199 | 250 | IPR000408 | - | |
Vium2883g00001 | 914 | MobiDBLite | consensus disorder prediction | 797 | 820 | - | - | |
Vium2883g00001 | 914 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 185 | 195 | IPR000408 | - | |
Vium2883g00001 | 914 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 31 | 91 | IPR000408 | - | |
Vium2883g00001 | 914 | MobiDBLite | consensus disorder prediction | 722 | 741 | - | - | |
Vium2883g00001 | 914 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 313 | 362 | IPR000408 | - | |
Vium2883g00001 | 914 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 144 | 195 | IPR000408 | - | |
Vium2883g00001 | 914 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 92 | 140 | IPR000408 | - | |
Vium2883g00001 | 914 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 199 | 247 | IPR000408 | - | |
Vium2883g00001 | 914 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 261 | 308 | IPR000408 | - | |
Vium2883g00001 | 914 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 367 | 414 | IPR000408 | - | |
Vium2883g00001 | 914 | MobiDBLite | consensus disorder prediction | 890 | 914 | - | - | |
Vium2883g00001 | 914 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
Vium2883g00001 | 914 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 431 | 491 | IPR013083 | - | |
Vium2883g00001 | 914 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 262 | 313 | IPR000408 | - | |
Vium2883g00001 | 914 | SUPERFAMILY | RCC1/BLIP-II | 30 | 419 | IPR009091 | - | |
Vium2883g00001 | 914 | Gene3D | - | 249 | 430 | IPR009091 | - | |
Vium2883g00001 | 914 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Vium2883g00001 | 914 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 366 | 417 | IPR000408 | - | |
Vium2883g00001 | 914 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 14 | 689 | - | - | |
Vium2883g00001 | 914 | MobiDBLite | consensus disorder prediction | 753 | 782 | - | - | |
Vium2883g00001 | 914 | Pfam | Transcription factor BRX N-terminal domain | 669 | 704 | IPR027988 | - | |
Vium2883g00001 | 914 | PRINTS | Chromosome condensation regulator RCC1 signature | 185 | 201 | IPR000408 | - | |
Vium2883g00001 | 914 | PRINTS | Chromosome condensation regulator RCC1 signature | 303 | 321 | IPR000408 | - | |
Vium2883g00001 | 914 | PRINTS | Chromosome condensation regulator RCC1 signature | 94 | 110 | IPR000408 | - | |
Vium2883g00001 | 914 | PRINTS | Chromosome condensation regulator RCC1 signature | 361 | 382 | IPR000408 | - | |
Vium2883g00001 | 914 | PRINTS | Chromosome condensation regulator RCC1 signature | 144 | 160 | IPR000408 | - | |
Vium2883g00001 | 914 | PRINTS | Chromosome condensation regulator RCC1 signature | 201 | 215 | IPR000408 | - | |
Vium2883g00001 | 914 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 237 | 247 | IPR000408 | - | |
Vium2883g00001 | 914 | Coils | Coil | 618 | 659 | - | - | |
Vium2883g00001 | 914 | ProSiteProfiles | BRX domain profile. | 834 | 889 | IPR013591 | - | |
Vium2883g00001 | 914 | Gene3D | - | 8 | 248 | IPR009091 | - | |
Vium2883g00001 | 914 | FunFam | PH, RCC1 and FYVE domains-containing protein 1 | 252 | 423 | - | - | |
Vium2883g00001 | 914 | SMART | fyve_4 | 416 | 485 | IPR000306 | GO:0046872 | |
Vium2883g00001 | 914 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 314 | 365 | IPR000408 | - | |
Vium2883g00001 | 914 | FunFam | Putative E3 ubiquitin-protein ligase HERC1 | 424 | 492 | - | - | |
Vium2883g00001 | 914 | Pfam | FYVE zinc finger | 418 | 484 | IPR000306 | GO:0046872 | |
Vium2883g00001 | 914 | Pfam | Transcription factor regulating root and shoot growth via Pin3 | 833 | 888 | IPR013591 | - | |
Vium2883g00001 | 914 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 92 | 143 | IPR000408 | - | |
Vium2883g00001 | 914 | MobiDBLite | consensus disorder prediction | 583 | 613 | - | - | |
Vium2883g00001 | 914 | SUPERFAMILY | FYVE/PHD zinc finger | 418 | 493 | IPR011011 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vium2883g00001 | Vium-Chr2883 | 60 | 3936 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vium2883g00001 | 835 | 905 | Major Intrinsic Protein MIP | AT1G31880 | 51.389 | 3.80e-15 | 76.3 |