Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2883g00001 GGATCTGGTTCAGATGCTTTTCGTGTCAGTGTTTCAAGTGCCCCTAGTACTTCGAGTCATGGATCTGCACCAGATGACTATGATGCCCTGGGGGATGTATACATATGGGGCGAGGTTATCTGTGATCATGTTAAAATTGGTGCTGATAAAAATGTCAATTATTTCAGCCCAAGGGCAGATGTACTTCTCCCTAGACCACTGGAAGCCAATGTAGTTTTAGATGTGCATCATATAGCATGTGGTGTTAGACATGCTTCTCTAGTCACTAGGCAAGGTGAAGTTTTTACATGGGGCGAAGAATCAGGAGGACGCCTTGGTCATGGTGTTGGGAAGAATTTGGTTCAACCTCGTCTAGTTGAAGCGTTGACTTCTACAACTATTGATTTTGTTGCCTGTGGAGAGTTTCATTCATGTGCTGTTACAATGGCTGGGGAACTATACACATGGGGTGATGGTACACATAATGCAGGGCTTCTTGGTCATGGAAGTGATGTCAGCCATTGGATACCAAAGAGAATTGCCAATTCATTAGAGGGACTTCAAATTGCATTTGTTGCTTGTGGTCCATGGCACACAGCGCTGATAACTTCAACAGGGCAGCTGTTTACATTTGGGGATGGAACATTTGGTGTCCTGGGCCATGGAAATAAGGAAAATGTTTCATATCCTAAAGAAGTGGAATCCTTGTCTGGACTGAGGACAATAGCTGTAGCATGTGGGGTGTGGCATACTGCAGCTGTTGTAGAAGTTATGGCAACACACTCCAGTACAAGTGTATCATCAGGTAAATTGTTTACTTGGGGTGATGGAGACAAAAATCGCCTTGGACATGGGGACAAGGAGGCACGTCTTAAACCAACTTGTGTGCCTGCGCTTATTGATTACAATTTTCATAAAATTGCTTGTGGACACAGTTTGACAGCAGGCCTGACAACATCTGGACGTGTTTTTACTATGGGAAGTACTGTTTATGGTCAACTTGGGAATCCCCAGTCTGATGGGAAGCTTCCATGCTTGGTTGGAGACAAGATTGCTGGGGAATGTGTTGAAGAAATTGCTTGTGGTGCGTATCATGTTGCTGTATTAACATCCAAAAATGAAGTTTATACTTGGGGGAAAGGTGCAAATGGGAGATTGGGTCATGGAGATATCGAAGATCGAAATACACCAGCTTTGATTGAAGCACTGAAGGATAGACATGTGAAATATATAGCTTGTGGTTCAAACTACTCTGCTGCCATATGCCTTCATAAGTGGGTATCTGGTGCCGAGCAGTCTCAGTGCTCTACTTGTAGGCAGGCGTTTGGCTTTACAAGAAAGAGGCATAATTGTTATAACTGTGGATTGGTCCACTGCCATTCGTGCAGTTCAAGGAAAGCATTAAGAGCAGCATTGGCTCCTAATCCCGGCAAGCCATATCGTGTGTGTGATTCTTGCTATGTAAAATTGAACAAGGTTGCTGAAGCTAGCAATAGTAATAGAAGGAATGCCTTGCCTCGTTTGTCAGGTGAAAACAAGGATAGACTAGACAAATCTGATCTGAGATTATCCAAGGCAATAATTCCTTCTAATGTGGATTTGATAAAGCAACTAGATAATAAGGCAGCCAAGCAAGGAAAGAAAAATGATACATTCTCTCTGGTACGCACCTCACAACCACCTTCTCTGCTACAGCTGAAAGATGTTGTCATGTCCACTGCTCTTGATCTGAGACGAACAGTCCCAAGACCGGTGGTTGCACCATCAGGAGTAAGTTCCAGATCTGTGTCACCTTTTTCGAGAAGAACAAGCCCCCCTCGCTCAGCTACTCCAATTCCAACAACTTCAGGACTTTCCTTCTCGAAAAGTATTTCTGATAGCTTGAAGAAGACAAATGATCTTTTAAATCAAGAAGTGCAGAAGTTACATGCTCAGGTTGAGGGCCTGAGACAGAGATGTGAACTGCAAGAATTAGAGCTTCAAAGGTCAGCAAAAAAGACTGAAGAAGCTATGTTACTGGCTGCTGAGGAATCTGCAAAATGTAAAGCTGCAAAAGAAGTTATAAAGTCACTCACAGCACAGCTCAAAGATCTAGCCGAGAAGCTTCCTCCTGGAGTTTATGATACTGAGAACATAAGACCAGCTTACCTACCAAATGGTCTTGAGCCAAATGGCATCCACTATCCAGATTCAAATGGGGAGCAGCAGCACTCCAGAGCAGAGTCAATCAGTGGCTCTAGTTTGGCTTCCATGGGACTTGAATCCTCTCTACTGAATAGAACTGCGCGGAATTCACCAGGAACCAATGGAACTAATCTTCACCAGCAAATCCGGAGCCCTGTGATCTCTAATGGGACCAATACTTATCCAGATGTTAAATTGCCAAACGGTGGTGGTGTAATTCATGCAGGTAGCGGTAGCACAGCTGATGATGGTAGGGATTCTGGGAATTTTCACAATGACGAGAGTGGTCTGAAATCAAGGAATGCTGTACCTGCTGCTAATACTAATCAAATTGAAGCAGAATGGATTGAACAATATGAACCTGGTGTCTACATAACACTTGTGGCACTGCGTGATGGAACTAGAGATCTGAAGCGAGTACGCTTCAGCCGAAGGAGATTTGGAGAGCACCAAGCAGAAACCTGGTGGTCGGAGAACCGGGACAAGGTATATGAAAGATACAATGTTCGCAGTGCAGACAAACCTGCCGGCCAGGCGGCACGTAGTTCAGAAGGGGCTGGTTCACCTGTTTCCCAAACTTAG 2745 0.4441 GSGSDAFRVSVSSAPSTSSHGSAPDDYDALGDVYIWGEVICDHVKIGADKNVNYFSPRADVLLPRPLEANVVLDVHHIACGVRHASLVTRQGEVFTWGEESGGRLGHGVGKNLVQPRLVEALTSTTIDFVACGEFHSCAVTMAGELYTWGDGTHNAGLLGHGSDVSHWIPKRIANSLEGLQIAFVACGPWHTALITSTGQLFTFGDGTFGVLGHGNKENVSYPKEVESLSGLRTIAVACGVWHTAAVVEVMATHSSTSVSSGKLFTWGDGDKNRLGHGDKEARLKPTCVPALIDYNFHKIACGHSLTAGLTTSGRVFTMGSTVYGQLGNPQSDGKLPCLVGDKIAGECVEEIACGAYHVAVLTSKNEVYTWGKGANGRLGHGDIEDRNTPALIEALKDRHVKYIACGSNYSAAICLHKWVSGAEQSQCSTCRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKPYRVCDSCYVKLNKVAEASNSNRRNALPRLSGENKDRLDKSDLRLSKAIIPSNVDLIKQLDNKAAKQGKKNDTFSLVRTSQPPSLLQLKDVVMSTALDLRRTVPRPVVAPSGVSSRSVSPFSRRTSPPRSATPIPTTSGLSFSKSISDSLKKTNDLLNQEVQKLHAQVEGLRQRCELQELELQRSAKKTEEAMLLAAEESAKCKAAKEVIKSLTAQLKDLAEKLPPGVYDTENIRPAYLPNGLEPNGIHYPDSNGEQQHSRAESISGSSLASMGLESSLLNRTARNSPGTNGTNLHQQIRSPVISNGTNTYPDVKLPNGGGVIHAGSGSTADDGRDSGNFHNDESGLKSRNAVPAANTNQIEAEWIEQYEPGVYITLVALRDGTRDLKRVRFSRRRFGEHQAETWWSENRDKVYERYNVRSADKPAGQAARSSEGAGSPVSQT 914
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vium2883g00001 914 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 144 198 IPR000408 -
Vium2883g00001 914 FunFam PH, RCC1 and FYVE domains-containing protein 1 2 251 - -
Vium2883g00001 914 MobiDBLite consensus disorder prediction 711 741 - -
Vium2883g00001 914 MobiDBLite consensus disorder prediction 578 613 - -
Vium2883g00001 914 Coils Coil 667 694 - -
Vium2883g00001 914 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 422 484 IPR017455 -
Vium2883g00001 914 CDD FYVE_like_SF 427 480 - -
Vium2883g00001 914 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 199 250 IPR000408 -
Vium2883g00001 914 MobiDBLite consensus disorder prediction 797 820 - -
Vium2883g00001 914 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 185 195 IPR000408 -
Vium2883g00001 914 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 31 91 IPR000408 -
Vium2883g00001 914 MobiDBLite consensus disorder prediction 722 741 - -
Vium2883g00001 914 Pfam Regulator of chromosome condensation (RCC1) repeat 313 362 IPR000408 -
Vium2883g00001 914 Pfam Regulator of chromosome condensation (RCC1) repeat 144 195 IPR000408 -
Vium2883g00001 914 Pfam Regulator of chromosome condensation (RCC1) repeat 92 140 IPR000408 -
Vium2883g00001 914 Pfam Regulator of chromosome condensation (RCC1) repeat 199 247 IPR000408 -
Vium2883g00001 914 Pfam Regulator of chromosome condensation (RCC1) repeat 261 308 IPR000408 -
Vium2883g00001 914 Pfam Regulator of chromosome condensation (RCC1) repeat 367 414 IPR000408 -
Vium2883g00001 914 MobiDBLite consensus disorder prediction 890 914 - -
Vium2883g00001 914 MobiDBLite consensus disorder prediction 1 24 - -
Vium2883g00001 914 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 431 491 IPR013083 -
Vium2883g00001 914 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 262 313 IPR000408 -
Vium2883g00001 914 SUPERFAMILY RCC1/BLIP-II 30 419 IPR009091 -
Vium2883g00001 914 Gene3D - 249 430 IPR009091 -
Vium2883g00001 914 MobiDBLite consensus disorder prediction 1 23 - -
Vium2883g00001 914 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 366 417 IPR000408 -
Vium2883g00001 914 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 14 689 - -
Vium2883g00001 914 MobiDBLite consensus disorder prediction 753 782 - -
Vium2883g00001 914 Pfam Transcription factor BRX N-terminal domain 669 704 IPR027988 -
Vium2883g00001 914 PRINTS Chromosome condensation regulator RCC1 signature 185 201 IPR000408 -
Vium2883g00001 914 PRINTS Chromosome condensation regulator RCC1 signature 303 321 IPR000408 -
Vium2883g00001 914 PRINTS Chromosome condensation regulator RCC1 signature 94 110 IPR000408 -
Vium2883g00001 914 PRINTS Chromosome condensation regulator RCC1 signature 361 382 IPR000408 -
Vium2883g00001 914 PRINTS Chromosome condensation regulator RCC1 signature 144 160 IPR000408 -
Vium2883g00001 914 PRINTS Chromosome condensation regulator RCC1 signature 201 215 IPR000408 -
Vium2883g00001 914 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 237 247 IPR000408 -
Vium2883g00001 914 Coils Coil 618 659 - -
Vium2883g00001 914 ProSiteProfiles BRX domain profile. 834 889 IPR013591 -
Vium2883g00001 914 Gene3D - 8 248 IPR009091 -
Vium2883g00001 914 FunFam PH, RCC1 and FYVE domains-containing protein 1 252 423 - -
Vium2883g00001 914 SMART fyve_4 416 485 IPR000306 GO:0046872
Vium2883g00001 914 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 314 365 IPR000408 -
Vium2883g00001 914 FunFam Putative E3 ubiquitin-protein ligase HERC1 424 492 - -
Vium2883g00001 914 Pfam FYVE zinc finger 418 484 IPR000306 GO:0046872
Vium2883g00001 914 Pfam Transcription factor regulating root and shoot growth via Pin3 833 888 IPR013591 -
Vium2883g00001 914 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 92 143 IPR000408 -
Vium2883g00001 914 MobiDBLite consensus disorder prediction 583 613 - -
Vium2883g00001 914 SUPERFAMILY FYVE/PHD zinc finger 418 493 IPR011011 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vium2883g00001 Vium-Chr2883 60 3936 Dispersed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2883g00001 835 905 Major Intrinsic Protein MIP AT1G31880 51.389 3.80e-15 76.3