Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium287g00013 ATGTCCAAGGCGCGCGTCTACGCCGATGTCAATGCTCTTCGTCCCAAAGAGTATTGGGACTACGAGTCCCTCACCCTTCAGTGGGGTGATCAAGATGATTATGAAGTTGTGCGAAAAGTGGGCAGAGGGAAATATAGTGAGGTTTTTGAAGGCATTAATGTTAATAGCAATGAGCGCTGTATAATCAAGATTCTGAAACCTGTCAAGAAAAAAAAGATTAAAAGAGAGATAAAAATACTTCAGAATATTTGTGGAGGACCAAATATTGTCAAGCTTCTTGATATTGTCAGAGATCAGCATTCCAAAACTCCTAGTTTGATATTTGAGTATGTCAACAGCACGGATTTTAAAGTTCTGTACCCAACCTTGACTGATTATGACATACGCTATTACATATATGAGCTCCTTAAGGCCCTGGATTACTGCCACTCTCAAGGCGTTATGCACAGGGATGTCAAGCCTCATAATGTTATGATTGATCATGAGTTACGAAAACTTCGTTTGATTGATTGGGGTCTTGCTGAATTTTATCATCCTGGAAAGGACTATAACGTTCGTGTAGCTTCAAGATACTTCAAGGGTCCTGAACTTCTAGTTGATCTGCAAGAATATGACTACTCATTAGACATGTGGAGCCTTGGCTGCATGTTTGCTGGAATGATATTTCGCAAAGAACCTTTCTTTTATGGCCATGACAACCAGGATCAGCTTGTAAAAATAGCTAAGGTGCTTGGGACTGATGAACTGAATGCGTATCTTAATAAATATCATCTGGAACTTGATCCTCAACTTGATGCGCTTGTTGGAAGACACAGTCGAAAGCCCTGGTCTAAATTTATCAATGCAGATAATCAGCATCTTGTGTCTCCTGAGGCAATTGATTTTCTTGATAAGCTTCTTCGATATGATCACCAGGACAGGCTAACAGCTAAGGAAGCGATGGCACATCCATATTTCTCTCAGGTAAGGGCAGCAGAAAGTAGCAGAATGAGGACATAG 999 0.4074 MSKARVYADVNALRPKEYWDYESLTLQWGDQDDYEVVRKVGRGKYSEVFEGINVNSNERCIIKILKPVKKKKIKREIKILQNICGGPNIVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGVMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKDYNVRVASRYFKGPELLVDLQEYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNQDQLVKIAKVLGTDELNAYLNKYHLELDPQLDALVGRHSRKPWSKFINADNQHLVSPEAIDFLDKLLRYDHQDRLTAKEAMAHPYFSQVRAAESSRMRT 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium287g00013 332 SMART serkin_6 34 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium287g00013 332 Gene3D Transferase(Phosphotransferase) domain 1 111 319 - -
Vium287g00013 332 ProSiteProfiles Protein kinase domain profile. 34 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium287g00013 332 Pfam Protein kinase domain 34 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium287g00013 332 CDD STKc_CK2_alpha 15 319 IPR045216 GO:0004674|GO:0006468
Vium287g00013 332 FunFam Casein kinase II subunit alpha 111 322 - -
Vium287g00013 332 PANTHER CASEIN KINASE II SUBUNIT ALPHA 1 328 IPR045216 GO:0004674|GO:0006468
Vium287g00013 332 FunFam Casein kinase II subunit alpha 20 110 - -
Vium287g00013 332 SUPERFAMILY Protein kinase-like (PK-like) 12 323 IPR011009 -
Vium287g00013 332 ProSitePatterns Serine/Threonine protein kinases active-site signature. 147 159 IPR008271 GO:0004672|GO:0006468
Vium287g00013 332 Gene3D Phosphorylase Kinase; domain 1 34 110 - -
Vium287g00013 332 ProSitePatterns Protein kinases ATP-binding region signature. 40 63 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium287g00013 Vium-Chr287 75307 80581 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium287g00013 32 319 Core Cell Cycle Gene Families AT1G76540 29.126 2.15e-43 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Vium287g00013 Pkinase 1e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium287g00013 K03097 - gmx:100810748 654.825