Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium287g00005 ATGGTTTATCTCGCCGGTGCCGGATACAACGCAGTCGTCGGAATGAATAATCGGAGGCCAAAATTCTTTACGTCAATTATACCGAACAGCATAATTTCAACGCTATACGACGTCGCTTTTCTGTGTCGGTGTTGCAGAGAACATGACTTCAGTAGCACTTCTGAATCAGCTTGGACAGATTTTCCCGTAGAGAACGCCTACGAGCTGTTAGGAGTGTCTGAGACCAGTTCCTTCACCGAAATTAAAGCATCGTTTCGAAAATTGGCCAAAGAAACTCACCCAGACCTCGCTGGGTCAAGCAGTGATTCCAGTGTGTCTCGACGATTTGTGCAAATTCTGGCTGCTTATGAGATTCTTTCAGATTCTCAAAAGAGAGCCCATTATGACATGTACCTGTTGTCTCAGAAAAAGCTTATGCAAAAGCATTCTGAACAGGGTTCAAAATTGTATATTTACAAATCACAAGCTACTACGTTAAAGGAGATGGAAGTTGTTGAATGGTTAAAATGGTACAGATTAACTATAAATAATATTTTGTCAGAAAAGAGGGTGGTAGATGGAACAGGCTATTTTGATGTACTTGAGAGAGATTTTTATTCAGCTATTCATGCAGCATACTATGGTCCTGAAATTGATTCTATGCCCATGGAATTTCTTCCTGACTGCTTTGAGGCAGAGGAGAGGTCTTCTTATGAAACTCCTGAGGTTTTGCACTTAGTTTCAGGTCGTGATCTTTTCGGAATGGTTTGCCTAGCCAACAAGGTTCCAGAGATATCAACAATTAGCAATGAAATGTTAGCATCTTTTAGATCCTTCCATTCAGGCCCATGTCAATCTGTAACAAATGTGAATGACTACAGGAAAGCAGAAAGATCAGATGATTTTGAAGCCTATCAAGGTCTCGGCTCTGAAACTTCAAGTATTGTATCAGATGCATATAGACATCTTGAATTGCACATATCAGGAAGAGTTGTTGCTACAGCATCTAGGACCCTACCTAGATGCTGTTCTGATGTAATGCAGACAGAAGATACTGAAGATCACATTCAAGTGTTCCTTAACTTATATGAAGATCCCAAACATATCATGAGTGATTTTTGGAAAGGCTACCTAGCAAATGGTGCAGTTGGAAGAAGAATTCATTTGGGAACTATATCTGGACTTGGGAGCAGTCCGGATGAAGGTTGTTGTTATGTTTACAATGACAAGGGCACAAAGACCCATGCGATTATGAAGCATAGAACATTGATGGTGAAGCATATGCACTGGTATCAGGTGGGTGAGAAAGTTTCAGTTTGCGAGTGTAGATGCACTAGAGCACATTTACCACCAAGCAAATTTTGGCTATTTGAGCCTCGCTGTGGTTTCCATGACATAGGGGGTTGGTACGTTGAGACATATGGCAAAGATAAGCACGGTCGTACAAAGCCATCACAAAGATTTTGGGATGGCTTGGACTATAACATGCAAGCTGACATAAGACTTCATCCAGCAATGTATTTGTTTGCTCTTGCATATCGGACACTTGATCTTGAATACGCTAAAGCAAGCAAGAAATCATTTAGGAATGTTGTTGGAGCACAAATGTTTCGAGTTATTCATTGGTGCAAGAAACTTATTCAATAG 1626 0.4071 MVYLAGAGYNAVVGMNNRRPKFFTSIIPNSIISTLYDVAFLCRCCREHDFSSTSESAWTDFPVENAYELLGVSETSSFTEIKASFRKLAKETHPDLAGSSSDSSVSRRFVQILAAYEILSDSQKRAHYDMYLLSQKKLMQKHSEQGSKLYIYKSQATTLKEMEVVEWLKWYRLTINNILSEKRVVDGTGYFDVLERDFYSAIHAAYYGPEIDSMPMEFLPDCFEAEERSSYETPEVLHLVSGRDLFGMVCLANKVPEISTISNEMLASFRSFHSGPCQSVTNVNDYRKAERSDDFEAYQGLGSETSSIVSDAYRHLELHISGRVVATASRTLPRCCSDVMQTEDTEDHIQVFLNLYEDPKHIMSDFWKGYLANGAVGRRIHLGTISGLGSSPDEGCCYVYNDKGTKTHAIMKHRTLMVKHMHWYQVGEKVSVCECRCTRAHLPPSKFWLFEPRCGFHDIGGWYVETYGKDKHGRTKPSQRFWDGLDYNMQADIRLHPAMYLFALAYRTLDLEYAKASKKSFRNVVGAQMFRVIHWCKKLIQ 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium287g00005 541 PRINTS DnaJ domain signature 104 124 IPR001623 -
Vium287g00005 541 PRINTS DnaJ domain signature 85 100 IPR001623 -
Vium287g00005 541 PRINTS DnaJ domain signature 67 85 IPR001623 -
Vium287g00005 541 ProSiteProfiles dnaJ domain profile. 65 132 IPR001623 -
Vium287g00005 541 Pfam DnaJ domain 65 129 IPR001623 -
Vium287g00005 541 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 34 539 - -
Vium287g00005 541 CDD DnaJ 65 121 IPR001623 -
Vium287g00005 541 SMART dnaj_3 64 124 IPR001623 -
Vium287g00005 541 ProSitePatterns Nt-dnaJ domain signature. 109 128 IPR018253 -
Vium287g00005 541 Gene3D DnaJ domain 56 155 IPR036869 -
Vium287g00005 541 SUPERFAMILY Chaperone J-domain 63 135 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium287g00005 Vium-Chr287 30370 36940 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium287g00005 67 131 C2H2 Transcription Factor Family AT1G74250 42.647 2.48e-09 58.2