Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium287g00004 ATGTTTGTTCGTAGGTTACTGAATGAAAACAAAACAGCGTCACCACAAACAAGTAAGTTTAGCATGAAGACGTTTGATAAACCAGTTTCTGCAGCTACTTTCGTTTTCTTTTTGATCCTTTGTGATGTATCTTTAGCGACGATTGAGAGAAAAAATGATAATGAAAAGAGTACTTACATTGTTCATGTGGCCAAATCTGAAATGCCGACAATATTAAATCATTATTCAATTTGGTATCGCTCCATTTTGAAATCGATATCTGAATCAGCAGAAATACTCTACCACTATGACAATGCGATTCATGGATTTTCAACGAGATTAACTCCTGAAGAAGCCCGATTGTTGAAGAGTGAAATCGGGATTCTGAAGGTGCTGCCGGAGAAAATATACAAGCCACTCACAACTCGAACACCGCAGTTTCTTGGGCTTGATAAAATCAAAGACATGTTTCCTGAGTCAAACGCGACGAGTGACATCATTATTGGACTCCTCGACACTGGTGTTTGGCCTGAAAGCAAGAGTTTTGACGATGTCGAACTGGGACCCGTTCCTATGAGTTGGAAAGGAAAATGTGAATCGGGTCAGAATTTCAGTGCCGCCAATTGCAATAAAAAACTAATAGGAGCTAGGTTCTTCTTGAAAGGCTTCGAGGCCTCAGTGGGTCCCCTTAATGCAACGCAGTTTAGATCACCACGAGACTCTGACGGCCATGGCACCCACACTGCAAGCACAGCTGCAGGTTCTACAGTGAAAGGTGCGAACTTATTTGGTTATGCTTCTGGGGTCGCGCGTGGAATGGTCCCACAAGCTAGAGTTGCTATCTATAAGGTTTGTTGGCAAGATAATTGTGTTGCTTCTGATATACTGGCGGCAATGGACGCAGCCATCTCCGATAATGTCAATGTCATTTCGGCATCACTCGGAGGACAAGCAATTGATTATGATGAAGAAAACCTTGCCATTGGAGCCTTTGCAGCAATGGAGAAAGGGATTGTAGTTGCATGTGCTGCAGGAAACGATGGTCCTACCAACTCCACTCTCCAAAATGTAGCACCTTGGATAATCACTGTGGGAGCTGGCACAATAGATCGTGATTTTCCGGTATATGTCAAACTCGGGAATGGAAAGAACTATTCTGGAGTTTCAATCAGTGATGGTAGTTTTCTGCCTCGTACTTTTGTGCCACTCATATACGCTGGAAATGCAAGCGTAAATGTAGGTGCAGAGTTGTGTCTGACAGATAGCTTGGATCCAGAAAAGGTTAAGGGAAAAATTGTGTTCTGTGATCGTGGAAATATTTCAAGGGTGGAGAAAGGGCTTGCGGTGAAATCTGCTGGTGGTCTGGGCATGGTGTTAGCCAATGCAGAAATTGATGGAGAGGAATTGGTGGCGGATGCCCATCTTTTGCCAACAGCTGCAGTGGGTTTCAAAGCCTCCAAAGCCATTAAGATGTACCTGCAACAGACACAAAATCCAACAGCTACACTTGTGTTCCAGGGAACCGAGGTTGGAATTAAGCCGTCGCCAGTTGTTTCTGCATATAGTGCTCGAGGTCCAAACCCAGTCACACCAGAAATATTAAAACCTGATTTCATTGCTCCTGGTACAAACATATTAGCCGCATTTACGAAATATGCAGGTCCCACAAACCTCGACCAGGATGATAGGCGTGTGGATTTTAACATAATCACAGGAACATCCATGTCATGTCCTCACGCCAGTGGTATAGCAGCTTTGATTAAATCGGTTTATCCAAATTGGAGCCCAGCTGCAATTCGATCTGCGCTTATAACCACAGCTTATGCGTCTTACAACAATGGTGAAAAACTATTAGACAGTGCCACAAATGCTCCTTCAACACCGTTTGCCGTCGGTGCCGGACATGTGAATCCCATTCTCGCGCTTAATCCAGGACTTGTTTACGATTTAACAGCCGATGATTACCTGAACTTTCTCTGTGCATTAAACTACACACCTGACAGGATTGAAGCTGTGGCAAGGAGAAAGTTCAGCTGTGATGCACAGAAGCACTACAGTGTAACAAGCTTAAATTACCCTTCGTTTGGCGTGGTGTTTAAACCAGTATCAGGAAGCTCCATTGCAATCATTATTCACGAGCGAACTCTTACCAATGTGGGGATTGCAGGAACATACAAAGCATCGGTTACGTTGGATATCCCATCTGTGAATATCACTGTTGAGCCAAACGTGTTGAGTTTCAACAAAAATGAGAAAAAATCATACAAGGTGACATTTACAACTCCGAATCCGCCAACACGAAGGCAAGTTGGTTTTGGACGTTTAGAATGGTCAAATGGAAAAACTATAGTCGGAAGTCCTATTTCAATTATCTGGGAATAA 2361 0.435 MFVRRLLNENKTASPQTSKFSMKTFDKPVSAATFVFFLILCDVSLATIERKNDNEKSTYIVHVAKSEMPTILNHYSIWYRSILKSISESAEILYHYDNAIHGFSTRLTPEEARLLKSEIGILKVLPEKIYKPLTTRTPQFLGLDKIKDMFPESNATSDIIIGLLDTGVWPESKSFDDVELGPVPMSWKGKCESGQNFSAANCNKKLIGARFFLKGFEASVGPLNATQFRSPRDSDGHGTHTASTAAGSTVKGANLFGYASGVARGMVPQARVAIYKVCWQDNCVASDILAAMDAAISDNVNVISASLGGQAIDYDEENLAIGAFAAMEKGIVVACAAGNDGPTNSTLQNVAPWIITVGAGTIDRDFPVYVKLGNGKNYSGVSISDGSFLPRTFVPLIYAGNASVNVGAELCLTDSLDPEKVKGKIVFCDRGNISRVEKGLAVKSAGGLGMVLANAEIDGEELVADAHLLPTAAVGFKASKAIKMYLQQTQNPTATLVFQGTEVGIKPSPVVSAYSARGPNPVTPEILKPDFIAPGTNILAAFTKYAGPTNLDQDDRRVDFNIITGTSMSCPHASGIAALIKSVYPNWSPAAIRSALITTAYASYNNGEKLLDSATNAPSTPFAVGAGHVNPILALNPGLVYDLTADDYLNFLCALNYTPDRIEAVARRKFSCDAQKHYSVTSLNYPSFGVVFKPVSGSSIAIIIHERTLTNVGIAGTYKASVTLDIPSVNITVEPNVLSFNKNEKKSYKVTFTTPNPPTRRQVGFGRLEWSNGKTIVGSPISIIWE 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium287g00004 786 Pfam Fibronectin type-III domain 683 783 IPR041469 -
Vium287g00004 786 Gene3D - 363 504 - -
Vium287g00004 786 Pfam PA domain 395 482 IPR003137 -
Vium287g00004 786 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 42 132 IPR037045 -
Vium287g00004 786 FunFam Subtilisin-like protease SBT1.5 158 376 - -
Vium287g00004 786 FunFam subtilisin-like protease SBT1.5 363 503 - -
Vium287g00004 786 Gene3D - 652 784 - -
Vium287g00004 786 Pfam Subtilase family 157 625 IPR000209 GO:0006508|GO:0008236
Vium287g00004 786 SUPERFAMILY Subtilisin-like 133 639 IPR036852 GO:0004252|GO:0006508
Vium287g00004 786 PRINTS Subtilisin serine protease family (S8) signature 156 175 IPR015500 -
Vium287g00004 786 PRINTS Subtilisin serine protease family (S8) signature 564 580 IPR015500 -
Vium287g00004 786 PRINTS Subtilisin serine protease family (S8) signature 233 246 IPR015500 -
Vium287g00004 786 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 59 782 IPR045051 -
Vium287g00004 786 FunFam Subtilisin-like protease SBT1.9 47 133 - -
Vium287g00004 786 SUPERFAMILY PA domain 406 460 IPR046450 -
Vium287g00004 786 Gene3D Peptidase S8/S53 domain 158 648 IPR036852 GO:0004252|GO:0006508
Vium287g00004 786 CDD Peptidases_S8_3 130 601 IPR034197 -
Vium287g00004 786 CDD PA_subtilisin_like 369 496 - -
Vium287g00004 786 ProSiteProfiles Serine proteases, subtilase domain profile. 140 635 - -
Vium287g00004 786 Pfam Peptidase inhibitor I9 58 131 IPR010259 -
Vium287g00004 786 ProSitePatterns Serine proteases, subtilase family, serine active site. 565 575 IPR023828 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium287g00004 Vium-Chr287 24845 27382 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium287g00004 36 785 Subtilisin-like Serine Gene Family AT5G67360 60.425 0.0 931
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium287g00004 - - gmx:100801866 1227.62