Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium287g00002 ATGTTGGACCGATGCCTGAGGCCACTGGAGATGTGTTTTGGTGGTGGAGGCAGCGACCAAAGCCTTCTCTGGGACACTGACCTTAAGCCACACGCTTCAGGGAACTACTCAATTGCAGTAGTACAAGCCAACTCCTCCTTGGAAGACCAAGCACAAGTCTTCACCTCTCCCTCCGCAACCTTTCTTGGCGTCTACGACGGCCACGGCGGACCACAAGCTTCCCGTTTCATCACCAATAATCTCTTCTCCTTCCTCCTCAAATTCACAGAAGAGGAAGGTGGGTTGTCGGAGGAGGTGATAAAGAAGGCGTTCGCGGCAACAGAGGAGGAGTTTTTGCGTTTTGTGAAACAAACATGGATTGCGCGGCCACAGATGGCTTCAGTGGGTTCGTGCTGTCTTCTGGGAGCGATTTCAAAGGACGTTCTTTATGTTGCTAATCTGGGGGATTCAAGGGCGGTTCTGGGTCGGAGAGCGTTGGAAGGAGAGGTGAATTGCGGTGGTGTGGTGGCGGAGCGTTTGTCCACTGATCATAATGTTGGAGTGGAGGAGGTCAGAAAGGAGGTGGAAGCTCTTCACCCTGATGATGCACACATTGTGGTCTGCACTCGTGGAGTTTGGCGAATCAAGGGCATTATTCAGGTATCAAGATCAATTGGAGATGCTTACTTAAAGAAAGCAAATTTTGACGCAAACCCTTTGTTCCAACAATTTGCATGTCCATTGTACTTGAAGAGACCTGTAATGACAGCCGAACCATCAATACTGATGCGGAAATTGAAGGAAAATGATCTGTTTTTAGTCTTTGCATCAGATGGACTTTGGGAGAATTTAACTGATGAAGAGGTTGTTCAAATTGTCTCAGAAAATCCCAGAACAGGAATAGCAAAACGAGTGGTGACAGTTGCACTAGAAGAGGCAGCAAAGAAGAGAGATATGAGGTATGATGACTTAAAGAAAGTTGAGAAAGGTCTGAGGCGTCATTTTCATGATGATATTACAGTGATCGTTCTATATCTCGATCATTTGAAAGAATCTATAAATGGTAGGTCAAGACATAAAGGAGATTATGGCTGCATTAATACTCCCATTGATATCTTCTCTCAAAGTGCAAACGAAATTGATCTTTAA 1128 0.4566 MLDRCLRPLEMCFGGGGSDQSLLWDTDLKPHASGNYSIAVVQANSSLEDQAQVFTSPSATFLGVYDGHGGPQASRFITNNLFSFLLKFTEEEGGLSEEVIKKAFAATEEEFLRFVKQTWIARPQMASVGSCCLLGAISKDVLYVANLGDSRAVLGRRALEGEVNCGGVVAERLSTDHNVGVEEVRKEVEALHPDDAHIVVCTRGVWRIKGIIQVSRSIGDAYLKKANFDANPLFQQFACPLYLKRPVMTAEPSILMRKLKENDLFLVFASDGLWENLTDEEVVQIVSENPRTGIAKRVVTVALEEAAKKRDMRYDDLKKVEKGLRRHFHDDITVIVLYLDHLKESINGRSRHKGDYGCINTPIDIFSQSANEIDL 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium287g00002 375 CDD PP2Cc 42 339 IPR001932 -
Vium287g00002 375 FunFam Probable protein phosphatase 2C 42 26 347 - -
Vium287g00002 375 Pfam Protein phosphatase 2C 57 308 IPR001932 -
Vium287g00002 375 ProSiteProfiles PPM-type phosphatase domain profile. 35 339 IPR001932 -
Vium287g00002 375 SUPERFAMILY PP2C-like 40 342 IPR036457 -
Vium287g00002 375 Gene3D - 25 347 IPR036457 -
Vium287g00002 375 SMART PP2C_4 28 337 IPR001932 -
Vium287g00002 375 ProSitePatterns PPM-type phosphatase domain signature. 61 69 IPR000222 GO:0043169
Vium287g00002 375 PANTHER PROTEIN PHOSPHATASE 36 337 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium287g00002 Vium-Chr287 10981 13897 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium287g00002 17 340 PP2C-type Phosphatase Gene Family AT3G51370 53.012 1.74e-131 380
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium287g00002 - K01102 gmx:100802394 631.713