Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2878g00058 ATGGAATATGGAGGGTTCTCAGATATTTTTGCCCCAGAAACGGAGTTTATGGATGAGCTATTTGTAGAAGGATGCTGGGTGGAAACAAGGGTTGGGTGTGGCACGGAGGCTTCAAAGTGGAACAGGAGCATGGAGTCGAATGGGGCGCACATAATATTTGAGGAAGAATCAGAGGCGGAAAGTTTGATGGTCGGGAAGAGATGGTGGATTGGACCAAGGGGGAATCCGGGGCCATCTTCGTCTGTGAAAGAGAGATTAGTGGTTGCAGTTGGGTACTTGAAAGAATACGCCAAGAACTCCAATATGGTGATTCAGGTATGGGTCCCCGCCCGGAGAGGATGTGAAGTAGGGATTCATCACCATCAGGATTTCCCATACACCCTCGACTATACTAACAATGGGGATGCAACAAGATCCTTTCAGTTTCACGAGGACCGGCTTTCTGATCACTGGCCTCCCAACATTCGCTTCCTCAGAACTCACGACTACACCCGCCTTCACCACTACGATCTACGTCCTGGATCTCTCGCCCTTCCCGTCTTTCAGAGAGGCACTGGAATTTGTCTCGGTGTTGTCGACATTCTCATGCCCAACAACGTCAACCCGGACCTTCACAACCTTCAGGGTGTTGATTTTAGGACCCCTTCTCTTCAGAACTTCATTCCACCAGCCATGACTGGTTTTGACGAGTTATACCAAGGTGCATTGAATGAGATAGTACAAGTGTTGACATGTGTGTGCAAGGCGCATGAGTTGCCTTTGGCTCTGACATGGGCTCCCTGCATCCAACAAGGAAAGAGTGGATGCGGGCATTCGAACGATGAGAATTATGTGTCGACTGTGGATCCAGCATGCTTTGTGGCAGATGTAGATGTATTGGGATTCCTGGAAGCGTGCTCTGAGTACCACCTTTTGGGGGGTCAAGGAGTGGTTGGAACAGCCTTCACAACCTCCAAGCCCTGCTTTGCAAATGACATCACTGCCTTCACCAAGGCTGAATATCCTCTCGCACACCATGCAAACATGTTCGGCTTGCATGCCGCTGTGGCCATTCCTCTCCGGAGTGTTTCCTCTGATTTTGTCCTCGAATTTTTCCTCCCAAAGGATTGCCATGACACCCAAGACCAGAAGCAGATACTCAACTCCTTGTCTATGCTGGTGCAGCAAGCTTGCCGGAGTTTGCACGTTGTACTGGACAAGGAGGAGGAGGAGGAATTGGTATCACACCATCATCATCATAGCAAAGAAATGGAATCATCATCATGGATTGCACATATGATGGAGGCCCAACAGAAGGGGAAAGGTGTGTCCGTGTCTCTGGAATACCTCCAAGAGCCAAAACAAGAGTTCAAGGTGACAACCAACTGCAATGAACAGGTATTCTCGGACTTGGAAGGAACAAGCGGTGCTGGTGTCGGTGGCCGCCGGGGTGGCAGGAAATCAGGCGACAAGAGGCGAACCAAGGCAGAGAAGACTATCAGCTTGCCGGTTCTAAGACAATACTTTGCAGGAAGCCTAAAAGACGCTGCCAAGAGCATTGGGGTATGTCCTACCACTTTAAAAAGAATATGCAGACAACATGGGATCACGAGGTGGCCTTCAAGGAAAATTAAGAAGGTGGGGCACTCCTTAAGGAAACTTCAACTTGTGATCGACTCCGTCCAGGGTGCCGAAGGTGCCATTCAAATTGGCTCCTTCTACACCAGTTTTCCAGAGTTGAGCTCTGCCAATGGTGTTTCTGAATCACCCAAGATAAACAGTGATAATTCCAAGTTTTATTCCGAAAATGGGTTGTTTAGTAACCAAGGAGTTACTTCCACTTCGTCTTGCAGTCAGAGTTGTAACCCCAGTTTGAACCAATCAACCACTCTGATCAGCAGCAACAATAATAACAACCCTGAGATTATTCTGATGTCAGATAAGCAATCAGTAGTTGGCGCATCAATGCAAGTCCACCATCCTCCTATTCCCATTTCCATTCCCATTCCCATTCAAAGCCTGGATGCTCTACCTCCCCTGCCCCAAACCAGCAGTGTCTGGAACACAGGCGGTGGTACTTTCAGGGTGAAAGCTACTTTTGGAGATGAAAAAATTCGTTTTAGCTTGCAACCAAATTGCGGATTCAGAGATTTGCAGATGGAAATTGCAAGACGTTTCAATCTGAAGGAGATGAGCAAAATTCAGGTGAAGTATTTGGACGATGCTCAAGAGTGGGTTCTTTTGACATGCGATGCAGATCTTGAGGAGTGTAAAGACATAAATAGATCATCTCAGAGCCGCACAGTTAGACTATTCCTCTTTCATGCTTCGCCACTAAATCATTCAACTAATGCATTTGGCAGCACCAGCCCCACTTAA 2358 0.4784 MEYGGFSDIFAPETEFMDELFVEGCWVETRVGCGTEASKWNRSMESNGAHIIFEEESEAESLMVGKRWWIGPRGNPGPSSSVKERLVVAVGYLKEYAKNSNMVIQVWVPARRGCEVGIHHHQDFPYTLDYTNNGDATRSFQFHEDRLSDHWPPNIRFLRTHDYTRLHHYDLRPGSLALPVFQRGTGICLGVVDILMPNNVNPDLHNLQGVDFRTPSLQNFIPPAMTGFDELYQGALNEIVQVLTCVCKAHELPLALTWAPCIQQGKSGCGHSNDENYVSTVDPACFVADVDVLGFLEACSEYHLLGGQGVVGTAFTTSKPCFANDITAFTKAEYPLAHHANMFGLHAAVAIPLRSVSSDFVLEFFLPKDCHDTQDQKQILNSLSMLVQQACRSLHVVLDKEEEEELVSHHHHHSKEMESSSWIAHMMEAQQKGKGVSVSLEYLQEPKQEFKVTTNCNEQVFSDLEGTSGAGVGGRRGGRKSGDKRRTKAEKTISLPVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKVGHSLRKLQLVIDSVQGAEGAIQIGSFYTSFPELSSANGVSESPKINSDNSKFYSENGLFSNQGVTSTSSCSQSCNPSLNQSTTLISSNNNNNPEIILMSDKQSVVGASMQVHHPPIPISIPIPIQSLDALPPLPQTSSVWNTGGGTFRVKATFGDEKIRFSLQPNCGFRDLQMEIARRFNLKEMSKIQVKYLDDAQEWVLLTCDADLEECKDINRSSQSRTVRLFLFHASPLNHSTNAFGSTSPT 785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2878g00058 785 Pfam RWP-RK domain 493 540 IPR003035 -
Vium2878g00058 785 Pfam PB1 domain 686 768 IPR000270 GO:0005515
Vium2878g00058 785 Gene3D - 687 769 - -
Vium2878g00058 785 PANTHER PROTEIN NLP8 60 773 IPR045012 GO:0003700
Vium2878g00058 785 SUPERFAMILY CAD & PB1 domains 676 771 - -
Vium2878g00058 785 ProSiteProfiles PB1 domain profile. 686 769 IPR000270 GO:0005515
Vium2878g00058 785 SMART PB1_new 686 769 IPR000270 GO:0005515
Vium2878g00058 785 ProSiteProfiles RWP-RK domain profile. 479 560 IPR003035 -
Vium2878g00058 785 CDD PB1_NLP 687 768 IPR034891 -
Vium2878g00058 785 MobiDBLite consensus disorder prediction 467 489 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2878g00058 Vium-Chr2878 320016 322916 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2878g00058 44 781 NLP Transcription Factor Family AT4G35270 43.412 0.0 584
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Vium2878g00058 PB1 4.8e-17 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2878g00058 - - pvu:PHAVU_009G115800g 1289.25