Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2878g00057 ATGGACGCCGCAAAGGAAAACCGCCTGCCCTCTTCAGATCTTCAAGGGCATCCAAGAATGGAGGAGAATCTGAAGGCCCTCCATCACCGGTTGCCTCTCCGTAGCATCAATCAGAATCTTATGCCTAACAGAAGCCCTGTTCATTCCCGCAAGAGCAAAGGACACACAGTTCTGCATCACCAACCCCCTCAGCCTCATGCAACTAAGAAACAGAACATGTTGGCTCCCAACCCAAGCTACACCTTAGATTGTGAAATCATAGCTATCGACGACAACGATGAGGATGCCAGTGACAATGCAGTTCCAGAATTCGTCAAGCATACTGAAGCCATGCTCGACGAAATAGACAGGATTGAGGAAGTTGAAATGGAAGATGTGCAGGAACCTGTTTTAGACATCGACGCCTGCGATAGGACAGATCCACTTGCAGTTGTTGAGTACATCGATGATATCTACAGCCTCTACAAGAAAATCGAGGATTCGAGCTGTGTCTCTCCAAATTACATGACTAATCAATTTGACATTAATGAGAGGATGAGAGCCATTCTTGTTGACTGGCTTATTGAGGTTCACTACAAATTTGAGCTTTTGGAGGAGACATTGTTCCTTACTGTCAATCTCATCGACAGGTTCCTGGAGCGTCAGTCAATGATCAGAAAGAAACTTCAGTTAGTCGGCGTAACAGCTATGCTAATAGCTTGTAAGTACGAGGAGGTCTCAGTCCCAACCGTTGAGGATTTTATTCTGATAACAGACAAGGCATATACAAGAGATGAAGTTTTAGCTATGGAGAAATTGATGATGAACAGTTTGCAATTCAACTTGTCTGTGCCTACTCCATACATGTTCATGAGAAGATTTCTAAAGGCAGCTCATTCTGATAAAAAGCTGGAGCTCTCGTCCTTCTTCTTGATTGAGCTTTGCTTGGTGGAATACAAAATGCTGAAGTTTTCACCATCTTTGCTAGCTGCTGCAGCCATTTACACAGCTCAATGTAGCATGTACCAGTTTAAGCAATGGACTAAGACCAGTGAGTGGTATACTGATTACTCAGAAGAGCAGCTTCTAGAATGCTCAAGGCTGATGGTTACTTTCCATCGGAAAGCTGGATCAGGAAAACTCACTGGTGTACATAGAAAGTACAGTACATGGAGATATGGCTGTGCCGCAAAAGTAGAGCCAGCTCTGTTTTTACTGGATAATTAA 1206 0.4386 MDAAKENRLPSSDLQGHPRMEENLKALHHRLPLRSINQNLMPNRSPVHSRKSKGHTVLHHQPPQPHATKKQNMLAPNPSYTLDCEIIAIDDNDEDASDNAVPEFVKHTEAMLDEIDRIEEVEMEDVQEPVLDIDACDRTDPLAVVEYIDDIYSLYKKIEDSSCVSPNYMTNQFDINERMRAILVDWLIEVHYKFELLEETLFLTVNLIDRFLERQSMIRKKLQLVGVTAMLIACKYEEVSVPTVEDFILITDKAYTRDEVLAMEKLMMNSLQFNLSVPTPYMFMRRFLKAAHSDKKLELSSFFLIELCLVEYKMLKFSPSLLAAAAIYTAQCSMYQFKQWTKTSEWYTDYSEEQLLECSRLMVTFHRKAGSGKLTGVHRKYSTWRYGCAAKVEPALFLLDN 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2878g00057 401 SMART Cyclin_C_2 278 395 IPR004367 -
Vium2878g00057 401 SMART cyclin_7 282 364 IPR013763 -
Vium2878g00057 401 SMART cyclin_7 185 269 IPR013763 -
Vium2878g00057 401 Pfam Cyclin, N-terminal domain 150 276 IPR006671 -
Vium2878g00057 401 CDD CYCLIN_AtCycB-like_rpt2 278 394 - -
Vium2878g00057 401 Gene3D - 164 276 - -
Vium2878g00057 401 MobiDBLite consensus disorder prediction 39 73 - -
Vium2878g00057 401 PANTHER CYCLINS 98 382 IPR039361 -
Vium2878g00057 401 SUPERFAMILY Cyclin-like 140 275 IPR036915 -
Vium2878g00057 401 Pfam Cyclin, C-terminal domain 278 393 IPR004367 -
Vium2878g00057 401 FunFam G2/mitotic-specific cyclin-1 266 390 - -
Vium2878g00057 401 PIRSF Cyclin_A_B_D_E 4 401 IPR046965 GO:0016538|GO:0044772
Vium2878g00057 401 Gene3D - 150 391 - -
Vium2878g00057 401 SUPERFAMILY Cyclin-like 277 394 IPR036915 -
Vium2878g00057 401 CDD CYCLIN_AtCycB-like_rpt1 128 273 - -
Vium2878g00057 401 ProSitePatterns Cyclins signature. 180 211 IPR006671 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2878g00057 Vium-Chr2878 301332 304251 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2878g00057 34 399 Core Cell Cycle Gene Families AT1G20610 59.626 4.28e-160 455
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2878g00057 K21777 - gmx:100812029 622.854