Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2878g00042 ATGACGGAAAATACTACACCTAAACCTAAGATGGTATACAGGAGAAAGAAGCTTCGTAAGGACTCAAACTTCAAACTAGAGCCAACTAATATGCTGGCAAGTGCAAATTACCCTTCAGTCGTAAGCGCTGCTGCACATTTATTATCAGCTGAGGAACAACCTGCTGGTTTTCGAGTAAATCATGAAATGGAAGTGGATAAAAATCCTACCTCACCTTCAGTCTTGTGTGATGGAGTAACTAAAGATAACATTCATAAAAACTTAGGTATTAGCAATGTAAATGGTAGTTGCTCCTCTTCAAAGGCAGATATGGAAACTGAAATGAATGTAAATGGTGAATGGTCCACCTCTAGTGTAATAGTCATGGATTCCACAAGGGAAGAAGTGACAGAAAAGGATTTCTGCATTAATACTTTAAGAACCCATGGACTTCTTGGAGAATATTCTCCTGAAGATAATGTGGCTTCTGGGGAAGATACTGTCATCACGGGTAATAACTGCTGTTCCAGGTCATGCAAAATATGTGATCGTGTAGACAGTTCACTGAACATGCTTTTATGTGATCATTGTGAAGATGCATATCATCCATCTTGCTACAATTCACGTTTGAAAAAATTGCCAATTGATGAGTGGTTTTGTCATTCATGTCTTAAGAAAAGGCAAAAAAATCTCAAGGAACCAAGTATCCACAATGAATTGGGCAAATGTAGAGCTACCTCAGTCAAGGGTGAATCAAATCCCATACTTTTGATGTTGAGAGACACCAAGCCATATACATCTAGTGTGCGGGTTGGTAAAGGATTTCAAGTAGAAGTTCTTGATTGGTCAGGTCCGATAAAAAGTGATGAAGATACCCTTCCTGAACCATTTGAAATTAATCCTTCAGACTTCAATAGACTGCTGGAAGAGAATACGCGAAGTCCTGCTAAACTTAGTGCCATTGGTAATTGGATCCAATGTCAGACAGTTATAGACAGAGCTAATGGAACTATATGTGGAAAATGGCGCAGGGCACCTTTTTTTGAAGTTCAAACTAATGCCTGGGAGTGCTTTTGTGCTATCCATTGGGATCCATCTCATGCTGATTGTGCTGTACCTCAGGAGCTTGAAACAGATCAAGTATTGAAGCAACTGAAGTATGTGGAAGTGCTACGGCCACGAATTTCTGCTAAACGGAAGAAATCAGATAGCACACAAGATATGGATTGA 1209 0.3962 MTENTTPKPKMVYRRKKLRKDSNFKLEPTNMLASANYPSVVSAAAHLLSAEEQPAGFRVNHEMEVDKNPTSPSVLCDGVTKDNIHKNLGISNVNGSCSSSKADMETEMNVNGEWSTSSVIVMDSTREEVTEKDFCINTLRTHGLLGEYSPEDNVASGEDTVITGNNCCSRSCKICDRVDSSLNMLLCDHCEDAYHPSCYNSRLKKLPIDEWFCHSCLKKRQKNLKEPSIHNELGKCRATSVKGESNPILLMLRDTKPYTSSVRVGKGFQVEVLDWSGPIKSDEDTLPEPFEINPSDFNRLLEENTRSPAKLSAIGNWIQCQTVIDRANGTICGKWRRAPFFEVQTNAWECFCAIHWDPSHADCAVPQELETDQVLKQLKYVEVLRPRISAKRKKSDSTQDMD 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2878g00042 402 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 148 224 IPR013083 -
Vium2878g00042 402 ProSiteProfiles Zinc finger PHD-type profile. 169 219 IPR019787 -
Vium2878g00042 402 ProSiteProfiles Zinc finger CW-type profile. 311 371 IPR011124 GO:0008270
Vium2878g00042 402 SMART PHD_3 171 217 IPR001965 -
Vium2878g00042 402 SUPERFAMILY FYVE/PHD zinc finger 158 221 IPR011011 -
Vium2878g00042 402 Gene3D - 315 380 - -
Vium2878g00042 402 FunFam uncharacterized protein LOC106759733 isoform X4 315 380 - -
Vium2878g00042 402 ProSitePatterns Zinc finger PHD-type signature. 172 216 IPR019786 -
Vium2878g00042 402 Pfam PHD-finger 172 218 IPR019787 -
Vium2878g00042 402 PANTHER BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN PROTEIN 1A 159 228 IPR047171 GO:0006338
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2878g00042 Vium-Chr2878 238482 253377 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vium2878g00042 PHD 4.1e-10 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2878g00042 - - pvu:PHAVU_009G117100g 743.421