Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2878g00040 ATGTTAATACAAACTTCTCTCCTTAGTTCAGTTGAAGCTGGTCTATGTTATGTATCTGATGATGGGAAAGATGTTCTATGTGATCGGATGCCTAGTGGTGAAACTTGGCAGGTATGTCTCGAATGCAATAGGTACCCTCTTGACTGGTGTAGAAAAGCTGAACCAGTGGAGTCAGATAGAAGGAAAGCTGATGATCCTTACCGCTCAAGCTTGGGTCAGACATCAACTGCCAGTATAATGACGGAAAATACTACACCTAAACCTAAGATGGTATACAGGAGAAAGAAGCTTCGTAAGGACTCAAACTTCAAACTAGAGCCAACTAATATGCTGGCAAGTGCAAATTACCCTTCAGTCGTAAGCGCTGCTGCACATTTATTATCAGCTGAGGAACAACCTGCTGGTTTTCGAGTAAATCATGAAATGGAAGTGGATAAAAATCCTACCTCACCTTCAGTCTTGTGTGATGGAGTAACTAAAGATAACATTCATAAAAACTTAGGTATTAGCAATGTAAATGGTAGTTGCTCCTCTTCAAAGGCAGATATGGAAACTGAAATGAATGTAAATGGTGAATGGTCCACCTCTAGTGTAATAGTCATGGATTCCACAAGGGAAGAAGTGACAGAAAAGGATTTCTGCATTAATACTTTAAGAACCCATGGACTTCTTGGAGAATATTCTCCTGAAGATAATGTGGCTTCTGGGGAAGATACTGTCATCACGGGTAATAACTGCTGTTCCAGGTCATGCAAAATATGTGATCGTGTAGACAGTTCACTGAACATGCTTTTATGTGATCATTGTGAAGATGCATATCATCCATCTTGCTACAATTCACGTTTGAAAAAATTGCCAATTGATGAGTGGTTTTGTCATTCATGTCTTAAGAAAAGGCAAAAAAATCTCAAGGAACCAAGTATCCACAATGAATTGGGCAAATGTAGAGCTACCTCAGTCAAGGGTGAATCAAATCCCATACTTTTGATGTTGAGAGACACCAAGCCATATACATCTAGTGTGCGGGTTGGTAAAGGATTTCAAGTAGAAGTTCTTGATTGGTCAGGTCCGATAAAAAGTGATGAAGATACCCTTCCTGAACCATTTGAAATTAATCCTTCAGACTTCAATAGACTGCTGGAAGAGAATACGCGAAGTCCTGCTAAACTTAGTGCCATTGGTAATTGGATCCAATGTCAGACAGTTATAGACAGAGCTAATGGAACTATATGTGGAAAATGGCGCAGGGCACCTTTTTTTGAAGTTCAAACTAATGCCTGGGAGTGCTTTTGTGCTATCCATTGGGATCCATCTCATGCTGATTGTGCTGTACCTCAGGAGCTTGAAACAGATCAAGTATTGAAGCAACTGAAGTATGTGGAAGTGTTTACCTACTTACATGCTCATACAGCTACGGCCACGAATTTCTGCTAA 1434 0.4017 MLIQTSLLSSVEAGLCYVSDDGKDVLCDRMPSGETWQVCLECNRYPLDWCRKAEPVESDRRKADDPYRSSLGQTSTASIMTENTTPKPKMVYRRKKLRKDSNFKLEPTNMLASANYPSVVSAAAHLLSAEEQPAGFRVNHEMEVDKNPTSPSVLCDGVTKDNIHKNLGISNVNGSCSSSKADMETEMNVNGEWSTSSVIVMDSTREEVTEKDFCINTLRTHGLLGEYSPEDNVASGEDTVITGNNCCSRSCKICDRVDSSLNMLLCDHCEDAYHPSCYNSRLKKLPIDEWFCHSCLKKRQKNLKEPSIHNELGKCRATSVKGESNPILLMLRDTKPYTSSVRVGKGFQVEVLDWSGPIKSDEDTLPEPFEINPSDFNRLLEENTRSPAKLSAIGNWIQCQTVIDRANGTICGKWRRAPFFEVQTNAWECFCAIHWDPSHADCAVPQELETDQVLKQLKYVEVFTYLHAHTATATNFC 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2878g00040 477 SMART PHD_3 250 296 IPR001965 -
Vium2878g00040 477 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 227 303 IPR013083 -
Vium2878g00040 477 ProSiteProfiles Zinc finger PHD-type profile. 248 298 IPR019787 -
Vium2878g00040 477 PANTHER BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN PROTEIN 1A 238 307 IPR047171 GO:0006338
Vium2878g00040 477 FunFam uncharacterized protein LOC106759733 isoform X4 394 459 - -
Vium2878g00040 477 MobiDBLite consensus disorder prediction 58 84 - -
Vium2878g00040 477 MobiDBLite consensus disorder prediction 68 84 - -
Vium2878g00040 477 ProSitePatterns Zinc finger PHD-type signature. 251 295 IPR019786 -
Vium2878g00040 477 Pfam PHD-finger 251 297 IPR019787 -
Vium2878g00040 477 ProSiteProfiles Zinc finger CW-type profile. 390 450 IPR011124 GO:0008270
Vium2878g00040 477 SUPERFAMILY FYVE/PHD zinc finger 237 300 IPR011011 -
Vium2878g00040 477 Gene3D - 394 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2878g00040 Vium-Chr2878 238477 253377 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vium2878g00040 PHD 5.2e-10 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2878g00040 - - gmx:100813057 771.155