Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2878g00029 ATGGTGTATGGCGATCACAACCTGTCAAATCCAACCTTGAAGCAATCCAACGTTAACGTTTCCGATCATCAGAGCATGTCCAAGAACCACATCTCACCCAACCGTCGCAGGTTTCGGTCCAGAAGGAGGAAAACCACCGCTGCTTGCCCCCACTCATCGGTCAACCTCCGCGCATACGACGTCGACGGCACCAACAGTCCCTATTACAAGGGTCTGACTGACCATTCCCTTGCGATTGTGAACACCATACCCTCCTGTGCTCAACCTCATCCTCACGCCCCTTCCTCCTACCTCCTTTCCAGTCCTTATTACAAAGGCCTTACGGACTATTCCCTTGTTATTCGTCCCTGGACTCCTCACAACCATCCTCTTCCTTTTCCCCACAACTCCCTCTCCTACACCCCTAGTCCTTACTATGCAGGTCTTCTCACTCACTACACCCTTTTCTTTCATGCACGCTCACTTCAACCTTCTTTCACTACAAACCTTCCAAACATCAAGAACCCTACTTTGAAGGACTTGATGCTCGATCCTCATCACGTTGGCTTTGTTACTCAAGAAACTGCTCAAGTTGGCAATCATGCATTGGAGGAACTTGGGGAGAAAACTGCTGCTGTGGTTGATCAAGAGAATGACGTTGATGTTGAGATGGTGATGACTGAAGAGAAGGCCTTGGGGGAGAGTGTATTCGAGCAGGCTACTGATGAGGTTGAGGGTGTGTCAGAAGAAGCAATCTTTGATACAAAGTTGATGAGTGATGATGATGTTGTTGAAGAGAAGCCATTGGGGGAGAAATCATCGGAAACAAGCGAGATGGATTTGTGGAAGGAAGAGGAAGTGCAAGAAGTGTTGCCTCTTGTTTCATCAGAAGCAGTTGTTGTTTCGTCTGAATCTGATTATACATGGGCAGCCAAATACCAACCCATGGCCTTGGAAGAGTTCATCTGCAACAAAGACATAGCAAGTCAACTCAAAACAATGGTAGAAGGTGGTTGTGGGTGCAGCCACTTTATATTTGAAGGACCACCAAGCGTGGGGAAGAGATCCATGATAAGGGCTATGCTTGGAGAGGTATTCGGCTCCGACAGGGTCCAGGTCGAAGAAGAATATAGAAACTTCATTTTGAAGGGAGAAATGATTGATAGTGTGCAAGTGCGCGTAAAGAAATCACTCCATCATGTCGAGGTGAATCTGTCAGAGACAAATGGATACGAAAAACATGTAATTGTTGATTTATTCAAGGAAACATATGGGCAGGTGATAGATAACTCGCAACCTTGTTATCCAGAAAACTGCAAAGCAATCGTTTTGTACGAGGCGGAGAAGCTGTCGATAGAATCGTTGTTGTATATTAAGTGGCTGCTAGAGAAGTACGAAGGGTGTAATAAGGTTTTCTTCTGTTGCTCTGATGAATCTAAGCTTCAACCTGTGAAGCCACTTTGCATCACTCTCCGCCTTTCATCGCCATCAACCCAAGAGCTAGCTACGATTTTGGAAAACATTGCAAAAGCAGAAGGAATACAGTTATCACGCCACTTGATCGATACCATAATTTTGAGGTCCAAGAACAACCTACGCCAGGCCATTCGTTCGTTAGAGGCCACTTGCCGAAATAGGGATGCTGTCAAAGAGAACGACGTGATTCTAACTGGTTGGGAACAAGATATTCTGGATATTGCCAAAAAAATAATCCAAGAACAAAGTCCACGACAGCTGTACGCCATTCGTAGAAAGCTACGAAGTCTTATGAGCCATGATGTTCCTCCTGAGTTTATTTACAAGTCTTTGGTACCAGAATTAACCACTCTTGTTCATCACTCGCTACGCCCAGGGATTGCCAAACTCGACAGGGACTTCATGAGACCCAGTGAAATCAAATTTGAAACCATGAAGCAGCACTTCTGTCATGTTCCAAAACAGTCCGAATCTGATGAGAAGAACACTGATTCAACAAAAAAGAATGCCTTAACTTACTTAAAAGTAGAAGAGTTTATAGCGAAAGTGATGAGCTGGTACAAGAATTGGTCTGAAAAAGACAGTAAGCTGTAG 2049 0.449 MVYGDHNLSNPTLKQSNVNVSDHQSMSKNHISPNRRRFRSRRRKTTAACPHSSVNLRAYDVDGTNSPYYKGLTDHSLAIVNTIPSCAQPHPHAPSSYLLSSPYYKGLTDYSLVIRPWTPHNHPLPFPHNSLSYTPSPYYAGLLTHYTLFFHARSLQPSFTTNLPNIKNPTLKDLMLDPHHVGFVTQETAQVGNHALEELGEKTAAVVDQENDVDVEMVMTEEKALGESVFEQATDEVEGVSEEAIFDTKLMSDDDVVEEKPLGEKSSETSEMDLWKEEEVQEVLPLVSSEAVVVSSESDYTWAAKYQPMALEEFICNKDIASQLKTMVEGGCGCSHFIFEGPPSVGKRSMIRAMLGEVFGSDRVQVEEEYRNFILKGEMIDSVQVRVKKSLHHVEVNLSETNGYEKHVIVDLFKETYGQVIDNSQPCYPENCKAIVLYEAEKLSIESLLYIKWLLEKYEGCNKVFFCCSDESKLQPVKPLCITLRLSSPSTQELATILENIAKAEGIQLSRHLIDTIILRSKNNLRQAIRSLEATCRNRDAVKENDVILTGWEQDILDIAKKIIQEQSPRQLYAIRRKLRSLMSHDVPPEFIYKSLVPELTTLVHHSLRPGIAKLDRDFMRPSEIKFETMKQHFCHVPKQSESDEKNTDSTKKNALTYLKVEEFIAKVMSWYKNWSEKDSKL 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2878g00029 682 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 301 628 - -
Vium2878g00029 682 Gene3D - 300 489 IPR027417 -
Vium2878g00029 682 MobiDBLite consensus disorder prediction 1 49 - -
Vium2878g00029 682 FunFam Replication factor C subunit 3 300 489 - -
Vium2878g00029 682 Gene3D - 551 672 - -
Vium2878g00029 682 MobiDBLite consensus disorder prediction 8 28 - -
Vium2878g00029 682 MobiDBLite consensus disorder prediction 30 46 - -
Vium2878g00029 682 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 300 547 IPR027417 -
Vium2878g00029 682 CDD HLD_clamp_RFC 489 547 - -
Vium2878g00029 682 Gene3D - 490 550 - -
Vium2878g00029 682 SUPERFAMILY post-AAA+ oligomerization domain-like 551 609 IPR008921 GO:0003677|GO:0006260
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2878g00029 302 675 Core DNA Replication Machinery Family AT5G27740 30.343 9.60e-47 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2878g00029 K10756 - gmx:102664389 781.556