Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2878g00025 ATGGACATTGATCTAGAGGTACCTATATGTGAGCATGAGAAGCTTAATATTGGATCTAGTGGAAATAATCTTACAGATACAACATGTGATATATGTATTGAGGAGCATAAAATCAATCCTTCGTCAATGACTGCACACTGTAAGGAAGTTTTAAGTGAAAAAGATTTCTGCTGTCAGGATCCGGTGGATTTGAATTCTAATCAAGTGGATGCAATTGATAGATTTCCCATTAAAGAACCACAAAATGGCTTGGAATTTGAATCAAAGGAGGCTGCCTATTCTTTCTACAGAGAATATGCTCGCTTAGTGGGTTTTGGCATCACGATAAAAGCCAGTCGACGCTCGAAAAAGTCTGGAAAATTTATTGATATTAAAATTGTTTGTTCTAGATTTGGAAGTAAGCGTGAGTCCGGTACAGCTGTTAATCCACGACCATGTACAAAGACAGACTGTAAGGCTGGAATGCATATGAAGAAGAAGATAGATGGGAATTGGATTATATACAATTTTGTAAAAGAGCACAATCATGAGATCTGTCCCGATGATTTTGTCACGGGACGTAGCAAACAAATAAGTAATCTAGCTTGTCGTAAGAAGGGCATGCAATTGGCTCTAGACGAGGGAGATGTGCAGTTGATCATCGAATACTTTATCTCTATGCAGTGTGAAAATCCAAACTTCTTTTATGCAATAGACCTGGATCAGGATAGACATTTGAGAACTGTATTTTGGGTTGACTCAAAAGGAATATTTGATTATAAAAAGTTTCATGATATTGTGTTGATTGACACTTTTTACCTGAAAAACAAATATAAAATTCCTTTTGTTCCTTTTGTCGGGGTCAACCATCACTTCCAGTACATTTTACTTGGATGTGCTCTGGTTGGGGAAGAGTCTGTTTCAGCTTTTATGTGGTTAATGCAAGCATGGCTCAAGGCAATGAGTAACCTACCTCCCGAGGTGATTATCACAGATCAGGAGCAATTCTTGAAAGAAGCTGTCATGGAAGTGTTTCCAGATAAACATCACTGTTTCTGCCTATCACATGTTTTATGTAAAATAACCAAGAATTTGGATTATATCATAAATGAAAATAATAATTTTATGGAAAATTTTGACAAATGCATTCATCATTACTGTTCAGATGAGAAATTTGAAGAGAGATGGTGGAAGTTGATGAATAGAATTGAACTAAAGGATGATGAATTGGTTCGGTCATTGTATGAAGATCGTAAAAAGTGGGCGCCTACATTCATGCGGGACATTTCTTTGGTTGGATTATCAACAATTGTAAGATCTGAGAGTGTATCATCTTTCTTTGACAAGTATATCCGTGTTGATTCTACCTTTGAGGAATTTATTGAACAGTATAAAGTTTTCTCTGTAGACTGTTTTGACATTGAAGCCAAAGCTGACATTGAAACAAAACAAAAGCAACCTACATTAAGATCTTTATCACCTTTTGAGAAGCAGCTATCCGCAATTTTTACTGATGCCATATTTAGAAATTTTCAGTTGGAAATATTGGGAATGATGTCCTGTCATCTGCAGATGGAAACAGAAGGAAGGGAAACTTTGACATTTCTTGTTCATGATTTTGAGAAGCGGAAGAAATTTATTGTTTCTTGGAAGGAAGTAGATTTGTATGTCTGTTGTTCATGTTGTTTATTTCAATACAAAGGTTTTCTATGTAGACATGCAATGCTTGTCCTTCAGAAGTCGGGCATAACCAGCATTCCATCCTATTATATTTTAAAACGATGGACAAAAGATTCAATGGCCGATCAATTTTCTGGTGACATAATTACCAGGACTGCTAATTGA 1824 0.3602 MDIDLEVPICEHEKLNIGSSGNNLTDTTCDICIEEHKINPSSMTAHCKEVLSEKDFCCQDPVDLNSNQVDAIDRFPIKEPQNGLEFESKEAAYSFYREYARLVGFGITIKASRRSKKSGKFIDIKIVCSRFGSKRESGTAVNPRPCTKTDCKAGMHMKKKIDGNWIIYNFVKEHNHEICPDDFVTGRSKQISNLACRKKGMQLALDEGDVQLIIEYFISMQCENPNFFYAIDLDQDRHLRTVFWVDSKGIFDYKKFHDIVLIDTFYLKNKYKIPFVPFVGVNHHFQYILLGCALVGEESVSAFMWLMQAWLKAMSNLPPEVIITDQEQFLKEAVMEVFPDKHHCFCLSHVLCKITKNLDYIINENNNFMENFDKCIHHYCSDEKFEERWWKLMNRIELKDDELVRSLYEDRKKWAPTFMRDISLVGLSTIVRSESVSSFFDKYIRVDSTFEEFIEQYKVFSVDCFDIEAKADIETKQKQPTLRSLSPFEKQLSAIFTDAIFRNFQLEILGMMSCHLQMETEGRETLTFLVHDFEKRKKFIVSWKEVDLYVCCSCCLFQYKGFLCRHAMLVLQKSGITSIPSYYILKRWTKDSMADQFSGDIITRTAN 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2878g00025 607 ProSiteProfiles Zinc finger SWIM-type profile. 537 575 IPR007527 GO:0008270
Vium2878g00025 607 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 69 592 IPR031052 GO:0006355
Vium2878g00025 607 SMART 26again6 550 577 IPR006564 GO:0008270
Vium2878g00025 607 Pfam MULE transposase domain 259 351 IPR018289 -
Vium2878g00025 607 Pfam FAR1 DNA-binding domain 94 179 IPR004330 -
Vium2878g00025 607 Pfam SWIM zinc finger 551 573 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2878g00025 Vium-Chr2878 159949 163136 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vium2878g00025 MULE 3.9e-25 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2878g00025 - - vum:124832246 1255.35