Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2878g00024 ATGGTGGTTGGGAGAGTTGCTGTTCCAAATCCTCCCTCCGGTCTGTTCCACAATCCTTCTTCTGCTGCCACCCTCATACCTCCACACATTCGTCTTCTCTCTTTCTCCGCTTCCGCCGCCGCCTCCTCCTCTTCCTCCTCCGCCAATCGCACTCGTCACACGTCCACTACAAAAAGCGATTCTCCCTTCTCAACGTTCGGAAGAGTCAAGAGTCAGAAACCGAAAACTCTGCTCCACAAAAGCAGGGACCGAAGACGCGCCCTTCAAGTTGAAGAAGAAGAAGAAGAAGAAGACGATAATGATGATTATGATGATAATGACGACTACTATGACAATCTCGCAGCCCCAAGAGGAAGACCTTCTCGTTCTGGGTCTCGGTCAGGTGGACGAAAACGAGGAGGATGGGATATCATTCCCAGGTTTCCCTCACAAGCCAAATCAACCACTGACACAAACTTCTTCAGTCTCAAGTCATTTAAAGAAATTGGGTGCGCTGACTACATCATTCAATCCCTCCAAAAAATCTTCTTAACGCGCCCTTCCCATGTACAGGCCATGGCATTTTCTCCTGTTCTTAGCGGAAAGACTTGTGTCATAGCTGACCAAAGTGGTTCTGGAAAGACATTAGCTTATCTTGCACCAATCATTCAGCGTCTTAGACAAGAAGAACAAGAAGGACGTAGTCAATCCTCTTCGCAAGCTCCTAGAGTGCTGGTACTCGTACCCACTGCAGAGTTAGCCTCTCAGGTCTTGGATAATTGTCGATCCTTGTCAAAATCTGGGGCTCCATTCAAATCTATGGTTGTCACGGGAGGTTTTCGACAACGGACTCAACTGGAAAATTTACAGCACGGAGTTGATGTCTTAATAGCAACTCCTGGCCGTTTTTTGTACCTCATGAATGAAGGCTTCTTGCAGTTAACAAATCTAAGATGTGCTGTGTTGGATGAGGTAGATATTCTCTTTGGTGATGAGGACTTTGAAATGGCTCTTCAATGCCTGATCAATTCTTCACCGGTTGACACACAGTATCTATTTGTGACTGCAACTTTACCAAAAAATGTTTTCACCAAATTGGTTGAAGTTTTTCCCGACTGCGAAATGATTATGGGGCCTGGTATGCATCGAATAAGTTCTCGCCTCGAAGAGATTCTAGTAGATTGCAGTGGAGAAGATGGACAAGAAAAAACTCCTGATACAGCATTTTTGAACAAGAAAACCGCACTTCTGCAGCTTGTGGAGGAAAGTCCTGTTCCAAGAACAATTGTGTTCTGCAACAAGATTGAAACATGCAGAAAAGTTGAAAATTCATTAAGGCGTTTTGATAGAAAAGGAAATCACATGCAAGTTCTACCCTTCCATGCTGCCATGACACAAGAATCACGGCTTGCTAGCATGGAAGAGTTTACTCGTCCTCCATCAAAAGGAGTTTCCCAGTTCATGATTTGCACTGACAGGGCTTCACGAGGTATTGACTTTGCAGGAGTGGATCATGTCATACTCTTTGACTTCCCACGTGATCCAAGTGAATATGTACGTCGTGTTGGAAGAACAGCCAGAGGTGCGAAGGGAGTAGGAAAGGCATTTATATTTGTGGTTGGCAAGCAAGTATCCCTTGCAAGCAAAATAATGGAAAGAAGTCAGAAGGGTCACCCACTACATGATATACCTACGGCATATTAG 1683 0.4498 MVVGRVAVPNPPSGLFHNPSSAATLIPPHIRLLSFSASAAASSSSSSANRTRHTSTTKSDSPFSTFGRVKSQKPKTLLHKSRDRRRALQVEEEEEEEDDNDDYDDNDDYYDNLAAPRGRPSRSGSRSGGRKRGGWDIIPRFPSQAKSTTDTNFFSLKSFKEIGCADYIIQSLQKIFLTRPSHVQAMAFSPVLSGKTCVIADQSGSGKTLAYLAPIIQRLRQEEQEGRSQSSSQAPRVLVLVPTAELASQVLDNCRSLSKSGAPFKSMVVTGGFRQRTQLENLQHGVDVLIATPGRFLYLMNEGFLQLTNLRCAVLDEVDILFGDEDFEMALQCLINSSPVDTQYLFVTATLPKNVFTKLVEVFPDCEMIMGPGMHRISSRLEEILVDCSGEDGQEKTPDTAFLNKKTALLQLVEESPVPRTIVFCNKIETCRKVENSLRRFDRKGNHMQVLPFHAAMTQESRLASMEEFTRPPSKGVSQFMICTDRASRGIDFAGVDHVILFDFPRDPSEYVRRVGRTARGAKGVGKAFIFVVGKQVSLASKIMERSQKGHPLHDIPTAY 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2878g00024 560 Pfam Helicase conserved C-terminal domain 405 521 IPR001650 -
Vium2878g00024 560 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 191 533 IPR027417 -
Vium2878g00024 560 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 408 560 IPR001650 -
Vium2878g00024 560 Gene3D - 140 368 IPR027417 -
Vium2878g00024 560 SMART helicmild6 432 522 IPR001650 -
Vium2878g00024 560 SMART ultradead3 176 384 IPR014001 -
Vium2878g00024 560 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 188 369 IPR014001 -
Vium2878g00024 560 Pfam DEAD/DEAH box helicase 182 355 IPR011545 GO:0003676|GO:0005524
Vium2878g00024 560 Gene3D - 402 555 IPR027417 -
Vium2878g00024 560 MobiDBLite consensus disorder prediction 41 142 - -
Vium2878g00024 560 CDD SF2_C_DEAD 381 532 - -
Vium2878g00024 560 CDD DEADc 168 355 - -
Vium2878g00024 560 MobiDBLite consensus disorder prediction 92 109 - -
Vium2878g00024 560 MobiDBLite consensus disorder prediction 41 71 - -
Vium2878g00024 560 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 60 558 - -
Vium2878g00024 560 Coils Coil 78 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2878g00024 Vium-Chr2878 154560 158920 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2878g00024 156 530 Eukaryotic Initiation Factors Gene Family AT3G19760 27.394 1.19e-30 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2878g00024 K13179 - gmx:100784377 786.563