Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2878g00023 ATGGTGGTTGGGAGAGTTGCTGTTCCAAATCCTCCCTCCGGTCTGTTCCACAATCCTTCTTCTGCTGCCACCCTCATACCTCCACACATTCGTCTTCTCTCTTTCTCCGCTTCCGCCGCCGCCTCCTCCTCTTCCTCCTCCGCCAATCGCACTCGTCACACGTCCACTACAAAAAGCGATTCTCCCTTCTCAACGTTCGGAAGAGTCAAGAGTCAGAAACCGAAAACTCTGCTCCACAAAAGCAGGGACCGAAGACGCGCCCTTCAAGTTGAAGAAGAAGAAGAAGAAGAAGACGATAATGATGATTATGATGATAATGACGACTACTATGACAATCTCGCAGCCCCAAGAGGAAGACCTTCTCGTTCTGGGTCTCGGTCAGGTGGACGAAAACGAGGAGGATGGGATATCATTCCCAGGTTTCCCTCACAAGCCAAATCAACCACTGACACAAACTTCTTCAGTCTCAAGTCATTTAAAGAAATTGGGTGCGCTGACTACATCATTCAATCCCTCCAAAAAATCTTCTTAACGCGCCCTTCCCATGTACAGGCCATGGCATTTTCTCCTGTTCTTAGCGGAAAGACTTGTGTCATAGCTGACCAAAGTGGTTCTGGAAAGACATTAGCTTATCTTGCACCAATCATTCAGCGTCTTAGACAAGAAGAACAAGAAGGACGTAGTCAATCCTCTTCGCAAGCTCCTAGAGTGCTGGTACTCGTACCCACTGCAGAGTTAGCCTCTCAGGTCTTGGATAATTGTCGATCCTTGTCAAAATCTGGGGCTCCATTCAAATCTATGGTTGTCACGGGAGGTTTTCGACAACGGACTCAACTGGAAAATTTACAGCACGGAGTTGATGTCTTAATAGCAACGCCTGGCCGTTTTTTGTACCTCATGAATGAAGGCTTCTTGCAGTTAACAAATCTAAGATGTGCTGTGTTGGATGAGGTAGATATTCTCTTTGGTGATGAGGACTTTGAAATGGCTCTTCAATGCCTGATCAATTCTTCACCGGTTGACACACAGTATCTATTTGTGACTGCAACTTTACCAAAAAATGTTTTCACCAAATTGGTTGAAGTTTTTCCCGACTGCGAAATGATTATGGGGCCTGGTATGCATCGAATAAGTTCTCGCCTCGAAGAGGTCAGGTTTCAGTTGTAA 1167 0.461 MVVGRVAVPNPPSGLFHNPSSAATLIPPHIRLLSFSASAAASSSSSSANRTRHTSTTKSDSPFSTFGRVKSQKPKTLLHKSRDRRRALQVEEEEEEEDDNDDYDDNDDYYDNLAAPRGRPSRSGSRSGGRKRGGWDIIPRFPSQAKSTTDTNFFSLKSFKEIGCADYIIQSLQKIFLTRPSHVQAMAFSPVLSGKTCVIADQSGSGKTLAYLAPIIQRLRQEEQEGRSQSSSQAPRVLVLVPTAELASQVLDNCRSLSKSGAPFKSMVVTGGFRQRTQLENLQHGVDVLIATPGRFLYLMNEGFLQLTNLRCAVLDEVDILFGDEDFEMALQCLINSSPVDTQYLFVTATLPKNVFTKLVEVFPDCEMIMGPGMHRISSRLEEVRFQL 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2878g00023 388 MobiDBLite consensus disorder prediction 41 142 - -
Vium2878g00023 388 CDD DEADc 168 355 - -
Vium2878g00023 388 MobiDBLite consensus disorder prediction 41 71 - -
Vium2878g00023 388 MobiDBLite consensus disorder prediction 92 109 - -
Vium2878g00023 388 Coils Coil 78 98 - -
Vium2878g00023 388 Gene3D - 140 368 IPR027417 -
Vium2878g00023 388 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 188 369 IPR014001 -
Vium2878g00023 388 SMART ultradead3 176 384 IPR014001 -
Vium2878g00023 388 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 60 384 - -
Vium2878g00023 388 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 150 360 IPR027417 -
Vium2878g00023 388 Pfam DEAD/DEAH box helicase 182 355 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2878g00023 Vium-Chr2878 149170 151117 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2878g00023 156 356 Eukaryotic Initiation Factors Gene Family AT3G19760 26.368 5.49e-16 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2878g00023 K13179 - gmx:100784377 454.136