Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2878g00016 ATGGGATGCGAAGGTGAATACGGTAGTGAAGCGCACCGAGCAGCCTCGCTGAGTAGGTTCCGTCAAAAGAGAAAACGACGATGTTTTGCTAATAAAATAAGATACAAGACACGCCAAGAAGCTACTCTCAGGGTACATCGTAGTAAGAGCCAGTTTATTTTATCCAAAATCCATGAGTCAGAGCAAGATGTCTTTCAATCAGAGATATTATGCTGTAACTGTGGCATTAGCTCAAAATGCACTCCTATGATGCGGCGAGGGCCATCTGGGCCAGCCTCACTTTGCAACGCTTGTGGCCTGTCTTGGGCAAACAGGGTATGA 321 0.4642 MGCEGEYGSEAHRAASLSRFRQKRKRRCFANKIRYKTRQEATLRVHRSKSQFILSKIHESEQDVFQSEILCCNCGISSKCTPMMRRGPSGPASLCNACGLSWANRV 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2878g00016 106 ProSitePatterns GATA-type zinc finger domain. 71 98 IPR000679 GO:0006355|GO:0043565
Vium2878g00016 106 Gene3D - 68 106 IPR013088 GO:0006355|GO:0008270
Vium2878g00016 106 Pfam CCT motif 13 53 IPR010402 GO:0005515
Vium2878g00016 106 PANTHER GATA TRANSCRIPTION FACTOR 28 10 105 IPR045280 GO:0006355
Vium2878g00016 106 SMART GATA_3 65 106 IPR000679 GO:0006355|GO:0043565
Vium2878g00016 106 Pfam GATA zinc finger 71 104 IPR000679 GO:0006355|GO:0043565
Vium2878g00016 106 ProSiteProfiles CCT domain profile. 13 55 IPR010402 GO:0005515
Vium2878g00016 106 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 67 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2878g00016 Vium-Chr2878 130987 132059 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2878g00016 13 105 Tify Gene Family AT4G24470 59.223 1.79e-36 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vium2878g00016 CCT 1.2e-09 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2878g00016 - - vra:106760511 211.075