Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2878g00009 ATGTCCAAAGAACTCACCGAAGAGGGTCAACAAAGGAAGGACTACTACGACCCTCCTCCCGCCCCTCTCATCGACCTCGCCGAGATCAAGCTCTGGTCCTTCTACAGAGCCCTCATCGCCGAGTTCATCGCCACCCTCCTCTTCCTCTATGTCACCGTCGCCACCGTCATCGGTCACAAGAAACAGACCGGTCCTTGTGACGGCGTTGGCCTTCTCGGCATAGCCTGGGCCTTCGGTGGCATGATCTTCGTTCTCGTTTACTGCACCGCCGGCATTTCCGGTGGACACATAAACCCAGCGGTCACTTTTGGCCTCTTCCTGGCGCGCAAGGTCTCGTTGATCCGTGCCGTTCTCTACATTGTAGCACAGTGCCTCGGTGCTATCAGCGGCGTCGGGTTGGTGAAGGCCTTCATGAAGCATCCCTACAACTCCCTCGGCGGCGGTGCCAACTCCGTCAGTTCTGGCTACTCCAAAGGCACTGCTCTCGGTGCCGAGATTATCGGCACATTTGTGCTTGTCTACACCGTTTTCTCTGCCACCGACCCCAAGAGAAGCGCGCGTGACTCTCATGTCCCCGTGTTGGCTCCGTTGCCCATTGGGTTCGCCGTTTTCATGGTTCACTTGGCTACCATACCCATTACCGGTACCGGGATTAACCCGGCCAGGAGCTTCGGAGCTGCTGTCATCTACAACAATGGCAAAGTTTGGGATGACCATTGGATCTTTTGGGTTGGACCGTTCGTGGGAGCGTTGGCGGCGGCGGCATACCACCAGTACATACTGAGAGCAGCGGCTATCAAGGCGTTGGGGTCGTTCCGGAGCAACCCCACGAACTAG 837 0.5735 MSKELTEEGQQRKDYYDPPPAPLIDLAEIKLWSFYRALIAEFIATLLFLYVTVATVIGHKKQTGPCDGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVLYIVAQCLGAISGVGLVKAFMKHPYNSLGGGANSVSSGYSKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNGKVWDDHWIFWVGPFVGALAAAAYHQYILRAAAIKALGSFRSNPTN 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2878g00009 278 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 6 267 IPR034294 -
Vium2878g00009 278 Gene3D Glycerol uptake facilitator protein. 21 278 IPR023271 -
Vium2878g00009 278 Pfam Major intrinsic protein 29 256 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium2878g00009 278 SUPERFAMILY Aquaporin-like 28 262 IPR023271 -
Vium2878g00009 278 FunFam Probable aquaporin PIP1-2 21 276 - -
Vium2878g00009 278 NCBIfam MIP family channel protein 40 256 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium2878g00009 278 CDD MIP 36 260 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium2878g00009 278 ProSitePatterns MIP family signature. 96 104 IPR022357 -
Vium2878g00009 278 PRINTS Major intrinsic protein family signature 115 134 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium2878g00009 278 PRINTS Major intrinsic protein family signature 78 102 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium2878g00009 278 PRINTS Major intrinsic protein family signature 36 55 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium2878g00009 278 PRINTS Major intrinsic protein family signature 200 222 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium2878g00009 278 PRINTS Major intrinsic protein family signature 164 182 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium2878g00009 278 PRINTS Major intrinsic protein family signature 240 260 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2878g00009 Vium-Chr2878 78179 82694 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2878g00009 1 278 Major Intrinsic Protein MIP AT2G16850 90.288 0.0 510