Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2877g00013 ATGGATACTGACGAGGAGTGCTCAATTGTTCTTGAATTACCTGAAAGGGATCCTTTCTTTGACAAAAAGAAGAAATTACTACAAAGTAAGGGTTTTAGTCCCAAAGAACGGATATACCTCAGGAGCTCTTCAAAACCTGACTGGATGAGTGCTACTGTGGAGTTGTTACTTCAGATTGCTCGGATCATGCAATTAAATGAGCTGGAACTTTATTTTGCTGAAGAGGACGTATGCACGTCGATGGAATTTTACAGTCCCAGGAATGAGTTGGAGGCTCTCAATTCAATTGTTTTTCTCACTGACATATCACTTGCTAGTTGTTCACATCTCCATACAAATATCCTGCAAGGGTTACGCCAAACAATTCTTGATTTAATTACTGATGTGGGGGACAAAAACAGTGTGAAGGGGGGAGTAGTTCAAAAAGACCATAGTTGTGACCAAGAAGAACGCCTGATAGAATGGGGAGAAAGCAATGGCGTAAAGACACAGTTAAAAATAGCTTATATTGAAGGAGCTGGTCGAGGTGCAATAGCAAGGAAAGATCTAAAAGTTGGAGACATTGCTTTGGAAATTCCTGTGTCAATTATCATTTCTGAGGAGCTTATTCATGAAACTGAAATGTATGGTGTCTTAAAAGAAATTGACGGCATATCATCTGAGACAATATTGCTATTATGGAGTATGAAAGAAAAGTACAACAGTGATTCAAAATTCAAAATTTATTTTGACACACTCCCAGAAAAATTTAATACAGGTTTGAGTTTCAGCATTGAAGCAATTACAGTGTTAGATGGAACCTTGCTGTTGGAAGAGATAATGCAAGCAAGACAGTTCCTGCATGCTCAATATGATGAGTTGTTCCCTGCTCTGTGCAATACTTTTCCTGATATATTTCCACCAGAGCTGTACACATGGGAGAAATTTTTATGGGCTTGTGAACTTTGGTACTCTAATAGCATGAAGATAATGTATTCCGATGGAAAGATAAAAACATGCTTGATCCCTATTGCTGGATTTCTCAATCATTCACTGTGCCCGCATGTTATGCACTATGGCCAAGTGGATCCTGCAAAAAATTCACTGAAATTTTGTCTATCAAGACCATGCAAATCTGGAGAAGAATGCTGCTTAAGCTACGGCAACTTCTCCAGCTCTCATCTAATTACCTTTTATGGTTTTTTACCACAAGGAGACAATCCATATGATGTTATTCCGTTAGACATTGACGGTGCCGACGTTGATTCTGGTGAGGATATACCCAAGTCCAACTGGACGAGTCACATGGTGCGTGGTACCTGGCTCTCCAGGGATCACAAGATATTCTACTATGGTCTTCCCTCTCCATTATTGGACCATCTTCGGAGATCTCGAAGTCCAATGCTGCGAACAAAGACCTTTTTGCAAGAAAACTTGGAAAATGAGCTGGAAGTTCTTGAAAATCTCAAAGATATCTTCGATGACATGATTGAAAATATGGGCGAAATCGATCTTAATTACAGAGAAAACTGCTGTTGGGATGAAAAATTGGCTATGGATTTTAAAAGTACACAAAGACGAATTGCCTGTTCTGTTTCAACCTCGTGTCTCGCTGGTATGGATATGTTAAAGAACGAACTATGCAAGTGCATGGCTGAGGACATCCTAGGCTAA 1653 0.3962 MDTDEECSIVLELPERDPFFDKKKKLLQSKGFSPKERIYLRSSSKPDWMSATVELLLQIARIMQLNELELYFAEEDVCTSMEFYSPRNELEALNSIVFLTDISLASCSHLHTNILQGLRQTILDLITDVGDKNSVKGGVVQKDHSCDQEERLIEWGESNGVKTQLKIAYIEGAGRGAIARKDLKVGDIALEIPVSIIISEELIHETEMYGVLKEIDGISSETILLLWSMKEKYNSDSKFKIYFDTLPEKFNTGLSFSIEAITVLDGTLLLEEIMQARQFLHAQYDELFPALCNTFPDIFPPELYTWEKFLWACELWYSNSMKIMYSDGKIKTCLIPIAGFLNHSLCPHVMHYGQVDPAKNSLKFCLSRPCKSGEECCLSYGNFSSSHLITFYGFLPQGDNPYDVIPLDIDGADVDSGEDIPKSNWTSHMVRGTWLSRDHKIFYYGLPSPLLDHLRRSRSPMLRTKTFLQENLENELEVLENLKDIFDDMIENMGEIDLNYRENCCWDEKLAMDFKSTQRRIACSVSTSCLAGMDMLKNELCKCMAEDILG 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2877g00013 550 CDD SET_LSMT 165 395 - -
Vium2877g00013 550 Gene3D - 2 111 IPR036464 -
Vium2877g00013 550 Pfam SET domain 174 381 IPR001214 GO:0005515
Vium2877g00013 550 Gene3D set domain protein methyltransferase, domain 1 112 394 - -
Vium2877g00013 550 FunFam Transcription factor, E2F and DP-related 147 395 - -
Vium2877g00013 550 ProSiteProfiles SET domain profile. 163 381 IPR001214 GO:0005515
Vium2877g00013 550 Pfam Rubisco LSMT substrate-binding 15 103 IPR015353 -
Vium2877g00013 550 FunFam SET domain-containing protein 4 142 - -
Vium2877g00013 550 Coils Coil 465 492 - -
Vium2877g00013 550 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 140 490 - -
Vium2877g00013 550 SUPERFAMILY SET domain 149 402 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2877g00013 Vium-Chr2877 127592 137260 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vium2877g00013 SET 3.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2877g00013 K19199 - gmx:100778605 1016.53