Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2877g00011 ATGGATACTGACGAGGAGTGCTCAATTGTTCTTGAATTACCTGAAAGGGATCCTTTCTTTGACAAAAAGAAGAAATTACTACAAAGTAAGGGTTTTAGTCCCAAAGAACGGATATACCTCAGGAGCTCTTCAAAACCTGACTGGATGAGTGCTACTGTGGAGTTGTTACTTCAGATTGCTCGGATCATGCAATTAAATGAGCTGGAACTTTATTTTGCTGAAGAGGACGTATGCACGTCGATGGAATTTTACAGTCCCAGGAATGAGTTGGAGGCTCTCAATTCAATTGTTTTTCTCACTGACATATCACTTGCTAGTTGTTCACATCTCCATACAAATATCCTGCAAGGGTTACGCCAAACAATTCTTGATTTAATTACTGATGTGGGGGACAAAAACAGTGTGAAGGGGGGAGTAGTTCAAAAAGACCATAGTTGTGACCAAGAAGAACGCCTGATAGAATGGGGAGAAAGCAATGGCGTAAAGACACAGTTAAAAATAGCTTGTAAGTTTCAGTGTGACTTTCTTTCCTTTTGTACAAATATTACCTTTCCTTTTAACATCTATAATACAAATTTCTTTCCCCCTAAAATCTTCACAGATATTGAAGGAGCTGGTCGAGGTGCAATAGCAAGGAAAGATCTAAAAGTTGGAGACATTGCTTTGGAAATTCCTGTGTCAATTATCATTTCTGAGGAGCTTATTCATGAAACTGAAATGTATGGTGTCTTAAAAGAAATTGACGGCATATCATCTGAGACAATATTGCTATTATGGAGTATGAAAGAAAAGTACAACAGTGATTCAAAATTCAAAATTTATTTTGACACACTCCCAGAAAAATTTAATACAGGTTTGAGTTTCAGCATTGAAGCAATTACAGTGTTAGATGGAACCTTGCTGTTGGAAGAGATAATGCAAGCAAGACAGTTCCTGCATGCTCAATATGATGAGTTGTTCCCTGCTCTGTGCAATACTTTTCCTGATATATTTCCACCAGAGCTGTACACATGGGAGAAATTTTTATGGGCTTGTGAACTTTGGTACTCTAATAGCATGAAGATAATGTATTCCGATGGAAAGATAAAAACATGCTTGATCCCTATTGCTGGATTTCTCAATCATTCACTGTGCCCGCATGTTATGCACTATGGCCAAGTGGATCCTGCAAAAAATTCACTGAAATTTTGTCTATCAAGACCATGCAAATCTGGAGAAGAATGCTGCTTAAGCTACGGCAACTTCTCCAGCTCTCATCTAATTACCTTTTATGGTTTTTTACCACAAGGAGACAATCCATATGATGTTATTCCGTTAGACATTGACGGTGCCGACGTTGATTCTGGTGAGGATATACCCAAGTCCAACTGGACGAGTCACATGGTGCGTGGTACCTGGCTCTCCAGGGATCACAAGATATTCTACTATGGTCTTCCCTCTCCATTATTGGACCATCTTCGGAGATCTCGAAGTCCAATGCTGCGAACAAAGACCTTTTTGCAAGAAAACTTGGAAAATGAGCTGGAAGTTCTTGAAAATCTCAAAGATATCTTCGATGACATGATTGAAAATATGGGCGAAATCGATCTTAATTACAGAGAAAACTGCTGTTGGGATGAAAAATTGGCTATGGATTTTAAAAGTACACAAAGACGAATTGCCTGTTCTGTTTCAACCTCGTGTCTCGCTGGTATGGATATGTTAAAGAACGAACTATGCAAGTGCATGGCTGAGGACATCCTAGGCTAA 1749 0.3911 MDTDEECSIVLELPERDPFFDKKKKLLQSKGFSPKERIYLRSSSKPDWMSATVELLLQIARIMQLNELELYFAEEDVCTSMEFYSPRNELEALNSIVFLTDISLASCSHLHTNILQGLRQTILDLITDVGDKNSVKGGVVQKDHSCDQEERLIEWGESNGVKTQLKIACKFQCDFLSFCTNITFPFNIYNTNFFPPKIFTDIEGAGRGAIARKDLKVGDIALEIPVSIIISEELIHETEMYGVLKEIDGISSETILLLWSMKEKYNSDSKFKIYFDTLPEKFNTGLSFSIEAITVLDGTLLLEEIMQARQFLHAQYDELFPALCNTFPDIFPPELYTWEKFLWACELWYSNSMKIMYSDGKIKTCLIPIAGFLNHSLCPHVMHYGQVDPAKNSLKFCLSRPCKSGEECCLSYGNFSSSHLITFYGFLPQGDNPYDVIPLDIDGADVDSGEDIPKSNWTSHMVRGTWLSRDHKIFYYGLPSPLLDHLRRSRSPMLRTKTFLQENLENELEVLENLKDIFDDMIENMGEIDLNYRENCCWDEKLAMDFKSTQRRIACSVSTSCLAGMDMLKNELCKCMAEDILG 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2877g00011 582 FunFam SET domain-containing protein 4 142 - -
Vium2877g00011 582 FunFam Transcription factor, E2F and DP-related 197 427 - -
Vium2877g00011 582 SUPERFAMILY SET domain 197 434 IPR046341 -
Vium2877g00011 582 ProSiteProfiles SET domain profile. 194 413 IPR001214 GO:0005515
Vium2877g00011 582 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 140 522 - -
Vium2877g00011 582 Gene3D set domain protein methyltransferase, domain 1 146 427 - -
Vium2877g00011 582 CDD SET_LSMT 199 427 - -
Vium2877g00011 582 Gene3D - 2 111 IPR036464 -
Vium2877g00011 582 Coils Coil 497 524 - -
Vium2877g00011 582 Pfam SET domain 206 413 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2877g00011 Vium-Chr2877 127587 137260 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vium2877g00011 SET 3.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2877g00011 K19199 - gmx:100778605 996.497