Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2875g00035 ATGGCGCAAATTCTGCTCCATGGCACTCTCCATGCGACAATCTACGAAGTCGACAACCTCAAAATTGGTGGCGGCAATTTCTTAACCAAGATCGTACATAACATCGAGGAGACCGTTGGTTTTGGAAAAGGTGTGACTAAATTATATGCAACCATTGATCTAGAGAAGGCACGAGTGGGAAGGACCAGAATTCTAGAAAAGGAGCACAAGAATCCAAGATGGTACGAGTCCTTTCACATTTACTGTGCCCATATGGCATCAAACATCATATTCACAGTGAAAGATGATAATCCTATTGGGGCAACCTTAATCGGAAGAGCATATGTTCCTGTCGAGGAGATCTTGCATGGTGAAGAAATAGACAGATGGGTTGAAATATTGGATGAGGATAGAAATCCAATACATGGAAATTCCAAGATCCACGTGAAGCTGCAGTATTTTGATATTTCGAAAGACCGCAACTGGGCTCTTGGCATCAGAAGTCCTAAATTTCCTGGTGTTCCTTATACTTTCTTTTCGCAAAGAAGAGGATGTAAGGTTTCTCTGTACCAGGATGCTCATGTATCAGACAACTTTGTCCCTAGAATACCACTCAGTGGAGGCCAGACTTACCAACCTCATAGATGTTGGGAGGATGTTTTTGATGCAATCACCAAAGCGCAACACTTGATATACATTACAGGTTGGTCTGTATATACTGAGATTTCGTTGGTAAGGGATTCAAGGAGGCCAAAGCCTGGAGGAGACATAACACTCGGTGAGCTTCTGAAGAAAAAAGCAAGTGAAGGTGTCAGGGTTTTGATGCTGGTCTGGGATGATAGAACTTCCGTTCCCTTGTTAAAAAAAGATGGTTTGATGGCCACTCATGATCAAGAAACAGAGCAGTTTTTCAGGGGCACTGAAGTGCATTGTGTTTTATGCCCTCGCAATCCCGATGACGGTGGAAGCATTGTTCAAGATTTGGAAATTTCTACCATGTTTACTCATCACCAGAAAATCGTAGTCGTGGACAGTGAATTGCCGAGTGGAGAATCTGAGAAGCGAAGGATTGTTAGTTTTGTGGGGGGAATTGATCTCTGTGATGGGAGATATGACACTCCGTTCCATTCTCTTTTCAGAACGCTGGACACAGCACATCATGATGATTTTCATCAGCCTAACTTCGGTGGTGCAGCAATAACAAAAGGTGGTCCGAGAGAACCATGGCACGACATCCATTCTCGACTCGAAGGGCCTATTGCTTGGGATGTTTTGTTCAACTTTGAGCAAAGATGGAGGAAGCAGGGAGGAAAGGACTTACTTGTTCAACTGAGAGACCTTGAAGATGTGATTATTCCTCCATCCCCAGTAACTTACCCCGATGATCGAGAGACATGGAACGTTCAGATATTTAGATCAATCGATGGTGGTGCTGCTTTTGGGTTCCCGGAGACTCCCGAAGAAGCTGCAAGAGTCGGGCTTGTGAGTGGGAAGGATAATATAATAGACCGTAGTATACAAGATGCTTATGTTAATGCCATTAGACGTGCAAAAAATTTCATCTATATTGAGAATCAGTATTTCCTCGGAAGCTGTTACGGTTGGAGTGCTGATGGCATTAAGCCTGAAGACATTGGCGCTTTGCATCTTATCCCGAAGGAGCTTTCACTTAAGATAGTGAGTAAGATTGAAGCTGGGGAAAGGTTCAGTGTGTATGTTGTTGTCCCAATGTGGCCAGAGGGTGTTCCGGAAAGTGCATCAGTTCAGGCAATATTGGATTGGCAGAGGAGAACAATGGATATGATGTACAAGGATGTCGTTCAGGCGCTCCAGGCCAAGGGAATAGAGGAAAATCCTCGGAACTATCTGACATTCTTCTGCCTTGGTAATCGGGAGGTGAAGAAAGAAGGAGAGTACGAGCCTCCACAAAGACCAGATCCTGATACAGATTACATCCGAGCCCAAGAGGCCCGGCGCTTCATGATATATGTTCATGCCAAGATGATGATAGTTGATGATGAATACATAATTGTTGGATCTGCCAACATAAACCAGAGATCAATGGATGGTGCAAGAGACTCTGAGATTGCAATGGGTGCTTATCAACCGTATCATTTGTTTACAAGTGAGCCAGCAAGGGGTCAGATTCATGGTTTCCGCATGGCATTATGGTATGAGCATCTTGGCATGCTTGACGAGTCCTTCCTCTACCCTGAAAGAACAGAATGTATAAGGAAGGTGAACCAGATTTCTGACAAGTATTGGGATCTGTATTCAAGTGAGTCTCTTGAGCATGATCTTCCTGGCCACTTACTCCGCTACCCTATTGGGGTTTCCAGCGAAGGAACTGTCACTGAGCTTCCAGGATTTGAATTCTTTCCTGACACCAAGGCTCGTGTTCTTGGCGACAAAGTTGACTACTTGCCACCCATTCTTACTACTTAG 2424 0.4439 MAQILLHGTLHATIYEVDNLKIGGGNFLTKIVHNIEETVGFGKGVTKLYATIDLEKARVGRTRILEKEHKNPRWYESFHIYCAHMASNIIFTVKDDNPIGATLIGRAYVPVEEILHGEEIDRWVEILDEDRNPIHGNSKIHVKLQYFDISKDRNWALGIRSPKFPGVPYTFFSQRRGCKVSLYQDAHVSDNFVPRIPLSGGQTYQPHRCWEDVFDAITKAQHLIYITGWSVYTEISLVRDSRRPKPGGDITLGELLKKKASEGVRVLMLVWDDRTSVPLLKKDGLMATHDQETEQFFRGTEVHCVLCPRNPDDGGSIVQDLEISTMFTHHQKIVVVDSELPSGESEKRRIVSFVGGIDLCDGRYDTPFHSLFRTLDTAHHDDFHQPNFGGAAITKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWRKQGGKDLLVQLRDLEDVIIPPSPVTYPDDRETWNVQIFRSIDGGAAFGFPETPEEAARVGLVSGKDNIIDRSIQDAYVNAIRRAKNFIYIENQYFLGSCYGWSADGIKPEDIGALHLIPKELSLKIVSKIEAGERFSVYVVVPMWPEGVPESASVQAILDWQRRTMDMMYKDVVQALQAKGIEENPRNYLTFFCLGNREVKKEGEYEPPQRPDPDTDYIRAQEARRFMIYVHAKMMIVDDEYIIVGSANINQRSMDGARDSEIAMGAYQPYHLFTSEPARGQIHGFRMALWYEHLGMLDESFLYPERTECIRKVNQISDKYWDLYSSESLEHDLPGHLLRYPIGVSSEGTVTELPGFEFFPDTKARVLGDKVDYLPPILTT 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2875g00035 807 Pfam Phospholipase D Active site motif 325 363 IPR001736 GO:0003824
Vium2875g00035 807 Pfam Phospholipase D Active site motif 654 680 IPR001736 GO:0003824
Vium2875g00035 807 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 653 680 IPR001736 GO:0003824
Vium2875g00035 807 FunFam Phospholipase D delta 200 443 - -
Vium2875g00035 807 Pfam C2 domain 8 126 IPR000008 -
Vium2875g00035 807 SMART C2_3c 9 123 IPR000008 -
Vium2875g00035 807 Gene3D Endonuclease Chain A 199 441 - -
Vium2875g00035 807 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 6 149 IPR035892 -
Vium2875g00035 807 Pfam Phospholipase D C terminal 725 796 IPR024632 -
Vium2875g00035 807 CDD C2_plant_PLD 2 147 - -
Vium2875g00035 807 FunFam Phospholipase D 466 699 - -
Vium2875g00035 807 PANTHER PHOSPHOLIPASE D 4 796 IPR015679 -
Vium2875g00035 807 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 325 363 IPR001736 GO:0003824
Vium2875g00035 807 SUPERFAMILY Phospholipase D/nuclease 151 443 - -
Vium2875g00035 807 ProSiteProfiles C2 domain profile. 1 124 IPR000008 -
Vium2875g00035 807 SMART pld_4 325 363 IPR001736 GO:0003824
Vium2875g00035 807 SMART pld_4 653 680 IPR001736 GO:0003824
Vium2875g00035 807 Gene3D C2 domain 6 156 IPR035892 -
Vium2875g00035 807 Gene3D Endonuclease Chain A 472 696 - -
Vium2875g00035 807 CDD PLDc_pPLDalpha_2 491 699 - -
Vium2875g00035 807 PIRSF PLD_plant 1 807 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Vium2875g00035 807 SUPERFAMILY Phospholipase D/nuclease 446 737 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2875g00035 Vium-Chr2875 136855 141500 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2875g00035 1 807 Phospholipase D Gene Family (Wang group) AT3G15730 81.975 0.0 1421
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2875g00035 K01115 - gmx:100784434 1560.81