Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2875g00017 ATGATGGGTATATTAAGTCGGGGAACATTGTTTTTCTGTGTGTTCCTTTTGTTTAGTACCTGTCTGGCGAAAGATCAACACATTCTTCAGATATATCCTGGCTTCAGTGCATCTCAGCCTGATTGGAGCGACCATAATGGTTTTTTCTTGATATCCAACAGCTCTGCTTTCGGTTTTGGATTCTTCACCACACTCGATGTTTCGTCGTTTGTTTTAGTTGTCTTGCACTTGAGCAGCTACAAAGTGGTTTGGACTGCCAACAGAGGTTTATTGGTTGGGAAATCTGCTAAATTTGAGCTGGAGCGTAGTGGGAATGCATATTTGAAAGGTGATGATGGTGTGGTTTGGGCAACGAATACAACAGGGCATAAAGTGAGAGCCATGGAGTTGCTAGACTCAGGGAATTTGGTGTTGGTTGGGGATAATGGGACAGCCATTTGGCAAAGTTTTAGCCATCCCACTGACACTCTTTTGCCAGGGCAAGAATTTGTGGAGGGAATGACGCTCAAAAGCTTCCACAACAGCTTGAACATGATCTATTATCTTAGTTATATGGCCGGTGATTTGCTTCTCTACGCAGGATTTGAACCTCCACAAGTGTACTGGTCCCTATCAGAAGAGGTTCATACAAGCTCCAAAAATTCCACCACCAAGGTTCACTCAGCTTCTCTGGTGTCCAATTCATGGAGATTTTATGACACAAATCGAGCTTTGCTGTGGAAAGTTAATTTCTCTGAGCACTCAGATCAAAACTCATTGTGGGCTGCTACCTTGGATCCAACCGGTGCTATCACTTTTTATGACCTTAACAAAGGGAAGCCTCCCACCCCTGAGGCATTTAAGGTACCACAAGACCCCTGTGGCACTCCTCAGCCTTGTGATCCTTACTATGTTTGCTTCTTTGAAAACTGGTGCATCTGCCCCAAACTTCTCAGAACTCGTTTTAACTGCAAACCTCCCAACATCTCCACCTGTTCCAGTACTTCAACAGAACTTGTGTCTGTCGGTGAAGATCTTGATTATTTTGCTCTCAAGTACACTGCACCGGTCTCAAAATCAACCCTGAATTCTTGCAAAGAGTCTTGTGTAGGAAACTGCTCTTGCCGTGTGCTTTTCTTTGAAAACAGTACCGGTAGATGCTTTCATTTTGATGAGACAGGGAGTTTCCAACGCAGTAAGTGGGGCACCAGTGGATATGTTTCATTCATGAAGGTCTCCATTGGTAGTGACGATGGACACAGCAACAAAAATGGAAGGAATGACACGGTGCTAGTTGTAATCATAGTTGTTCTCACAGTTCTGGTTATTGTTGGTCTTGTCACAGTATTCTTGTACTACTACAAGAGGAAGAAGAATGTTGCTAGGTATCCTGAAGACACCTTTGAGGAAGACGATGATTTCTTGGACAGTATCTCTGGGATGCCTGCGCGTTTTACTTTTTCTGCTCTTTGTAGAGCAACTAAGGACTTCTCCACAAAAATTGGGGAAGGAGGTTTTGGCTCAGTGTATTTAGGTGAGCTTGAAGATGGCACCCAGTTGGCCGTGAAAAAATTGGAAGGTGTTGGACAAGGTGCCAAAGAGTTCAAAGCAGAAGTGTCCATAATTGGAAGTATTCATCATGTTCATTTGGTGAAGCTCAAAGGGTTCTGTGCTGAGGGTCCTCATCGCCTTCTTGTCTATGAATACATGGCAAGGGGTTCTCTGGACAAATGGATCTTCAAGAACAGTGAGAACAGTTTCTTGCTGAACTGGGAAACAAGGTACAACATTGCAATAGGCACGGCTAAGGGATTGGCCTATCTCCACGAGGAGTGTGAAGTGAGGATCATCCACTGTGACATCAAGCCACAAAATGTTCTTCTTGATGACAATTTCACAGCAAAGGTTTCAGATTTTGGATTGGCCAAGCTAATGAGCCGCGAGCAGAGCCATGTGTTCACAACTCTGAGGGGCACAAGAGGGTATTTAGCACCAGAATGGATTACCAACTACGCAATTTCGGAGAAGAGTGATGTGTTCAGCTATGGCATGCTCTTGCTTGAGATAATCGGAGGGAGGAAGAACTATGATCAATGGGAAGGGGCAGAGAAGGCACATTTTCCTTCTTATGTGTTCAGAATGATGGATGAAGGGAAACTGAAAGAAGTTCTTGATCCAAAGATAGATATTGATGAGAAGGACGAAAGGGTTGAGACTGCTCTAAAAGTTGCTCTTTGGTGCATACAAGATGACGTGAGTTTGAGGCCTTCCATGTCAAAGGTATCTCAGATGCTTGAAGGCTTGTGTGTTGTACCTGATCCCCCTTCATTATCTCAAGCTGGTACTTATTCAGCTTTCATGAAATTGAGTAGCGGAGAAGCTACTTCATCGGGACNTAAAAATGCATTATAA 2391 0.4387 MMGILSRGTLFFCVFLLFSTCLAKDQHILQIYPGFSASQPDWSDHNGFFLISNSSAFGFGFFTTLDVSSFVLVVLHLSSYKVVWTANRGLLVGKSAKFELERSGNAYLKGDDGVVWATNTTGHKVRAMELLDSGNLVLVGDNGTAIWQSFSHPTDTLLPGQEFVEGMTLKSFHNSLNMIYYLSYMAGDLLLYAGFEPPQVYWSLSEEVHTSSKNSTTKVHSASLVSNSWRFYDTNRALLWKVNFSEHSDQNSLWAATLDPTGAITFYDLNKGKPPTPEAFKVPQDPCGTPQPCDPYYVCFFENWCICPKLLRTRFNCKPPNISTCSSTSTELVSVGEDLDYFALKYTAPVSKSTLNSCKESCVGNCSCRVLFFENSTGRCFHFDETGSFQRSKWGTSGYVSFMKVSIGSDDGHSNKNGRNDTVLVVIIVVLTVLVIVGLVTVFLYYYKRKKNVARYPEDTFEEDDDFLDSISGMPARFTFSALCRATKDFSTKIGEGGFGSVYLGELEDGTQLAVKKLEGVGQGAKEFKAEVSIIGSIHHVHLVKLKGFCAEGPHRLLVYEYMARGSLDKWIFKNSENSFLLNWETRYNIAIGTAKGLAYLHEECEVRIIHCDIKPQNVLLDDNFTAKVSDFGLAKLMSREQSHVFTTLRGTRGYLAPEWITNYAISEKSDVFSYGMLLLEIIGGRKNYDQWEGAEKAHFPSYVFRMMDEGKLKEVLDPKIDIDEKDERVETALKVALWCIQDDVSLRPSMSKVSQMLEGLCVVPDPPSLSQAGTYSAFMKLSSGEATSSGXKNAL 796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2875g00017 796 ProSiteProfiles PAN/Apple domain profile. 325 406 IPR003609 -
Vium2875g00017 796 SMART serkin_6 488 758 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2875g00017 796 FunFam S-receptor-like kinase 5 563 767 - -
Vium2875g00017 796 Gene3D Phosphorylase Kinase; domain 1 457 562 - -
Vium2875g00017 796 Gene3D - 41 152 IPR036426 -
Vium2875g00017 796 PIRSF SRK 2 795 IPR024171 GO:0004674
Vium2875g00017 796 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 39 769 - -
Vium2875g00017 796 SMART blect_4 41 153 IPR001480 -
Vium2875g00017 796 Gene3D Transferase(Phosphotransferase) domain 1 563 763 - -
Vium2875g00017 796 ProSitePatterns Protein kinases ATP-binding region signature. 494 517 IPR017441 GO:0005524
Vium2875g00017 796 SUPERFAMILY alpha-D-mannose-specific plant lectins 79 204 IPR036426 -
Vium2875g00017 796 FunFam serine/threonine-protein kinase PBS1-like 457 562 - -
Vium2875g00017 796 Pfam Protein kinase domain 491 756 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2875g00017 796 ProSiteProfiles Bulb-type lectin domain profile. 35 151 IPR001480 -
Vium2875g00017 796 ProSiteProfiles Protein kinase domain profile. 488 761 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2875g00017 796 ProSitePatterns Serine/Threonine protein kinases active-site signature. 609 621 IPR008271 GO:0004672|GO:0006468
Vium2875g00017 796 Pfam D-mannose binding lectin 82 163 IPR001480 -
Vium2875g00017 796 CDD STKc_IRAK 494 761 - -
Vium2875g00017 796 SUPERFAMILY Protein kinase-like (PK-like) 471 759 IPR011009 -
Vium2875g00017 796 CDD B_lectin 46 153 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2875g00017 Vium-Chr2875 102643 105535 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2875g00017 429 768 Receptor kinase-like Gene Family AT5G20050 44.290 2.04e-89 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vium2875g00017 Pkinase 7e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2875g00017 - - gmx:100816004 1379