Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vium2875g00011 | ATGGCTTTTTGCCCAATCTTTTGTTGCGGAAATGGTTCGGATCGCAAAGGAAGAGGGAAGAAGCAGCCTCCATGGCGGGTGTTTTCTTTGAAAGAATTGCACTCAGCTACAAATAATTTCAACTATGACAACAAGCTAGGAGAAGGGGGATTTGGCAGTGTGTACTGGGGCCAGCTTTGGGATGGATCACAAATTGCAGTGAAAAGATTGAAAGTTTGGAGCAACAAAGCAGACATGGAATTTGCTGTTGAAGTTGAGATATTGGCTAGAGTCCGTCACAAGAATCTTCTCAGTCTACGTGGCTATTGTGCTGAAGGTCAGGAACGGTTAATTGTGTATGATTACATGCCGAATTTGAGCTTGCTCTCTCATCTTCATGGACAGCATTCAGCAGAATCCCTTCTTGATTGGAGCCGGCGGATGAACATCGCAATTGGGTCTGCCGAGGGAATTGCATATCTTCACCACCAGTCAACACCACACATCATCCACAGAGATATCAAGGCAAGCAATGTGTTGTTGGATTCAGATTTCCAGGCTCGGGTTGCTGATTTTGGTTTTGCGAAGTTGATCCCTGATGGGGCAACACATGTGACTACAAGAGTTAAGGGCACCCTAGGGTACCTTGCACCTGAATATGCTATGCTAGGTAAAGCAAGCGAGAGTTGTGATGTCTACAGTTTTGGAATTCTTCTTCTAGAACTTGCTAGTGGCAAAAAACCACTTGAAAAACTTAGTCCTACAGTAAAGAGATCGATAAATGATTGGGCACTGCCTTTGGCTTGTGAAATGAAGTTTAGTGAACTAGCAGATCCAAAGCTGGATGGTAACTATGTGGAGGAAGAGCTTAAAAGAGTTGTTTTAATTGCGCTATTGTGTGCTCAGAGTCAGCCAGAGAAGAGGCCCACCATACTAGAGGTGGTAGAACTACTGAAGGGAGAATCCAAAGATAAGTTAATTCATCTGGAAAATAATGAAATCTTTAAAAGCCCTCCAGCTGTAGGACATACTGATGATGAGACATTTACAGCTGAAGGAAGTTCCGATTTCATTTCAGAAGAGAAAGAGTCAAAACCTGAGTTGGAAGAGAAAACTGGGCCATGA | 1104 | 0.4348 | MAFCPIFCCGNGSDRKGRGKKQPPWRVFSLKELHSATNNFNYDNKLGEGGFGSVYWGQLWDGSQIAVKRLKVWSNKADMEFAVEVEILARVRHKNLLSLRGYCAEGQERLIVYDYMPNLSLLSHLHGQHSAESLLDWSRRMNIAIGSAEGIAYLHHQSTPHIIHRDIKASNVLLDSDFQARVADFGFAKLIPDGATHVTTRVKGTLGYLAPEYAMLGKASESCDVYSFGILLLELASGKKPLEKLSPTVKRSINDWALPLACEMKFSELADPKLDGNYVEEELKRVVLIALLCAQSQPEKRPTILEVVELLKGESKDKLIHLENNEIFKSPPAVGHTDDETFTAEGSSDFISEEKESKPELEEKTGP | 367 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vium2875g00011 | 367 | Gene3D | Phosphorylase Kinase; domain 1 | 13 | 115 | - | - | |
Vium2875g00011 | 367 | ProSitePatterns | Protein kinases ATP-binding region signature. | 46 | 68 | IPR017441 | GO:0005524 | |
Vium2875g00011 | 367 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 162 | 174 | IPR008271 | GO:0004672|GO:0006468 | |
Vium2875g00011 | 367 | MobiDBLite | consensus disorder prediction | 329 | 367 | - | - | |
Vium2875g00011 | 367 | Pfam | Protein kinase domain | 41 | 308 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vium2875g00011 | 367 | MobiDBLite | consensus disorder prediction | 349 | 367 | - | - | |
Vium2875g00011 | 367 | SUPERFAMILY | Protein kinase-like (PK-like) | 22 | 311 | IPR011009 | - | |
Vium2875g00011 | 367 | FunFam | PTI1-like tyrosine-protein kinase At3g15890 | 116 | 327 | - | - | |
Vium2875g00011 | 367 | SMART | serkin_6 | 40 | 311 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vium2875g00011 | 367 | CDD | STKc_IRAK | 46 | 313 | - | - | |
Vium2875g00011 | 367 | ProSiteProfiles | Protein kinase domain profile. | 40 | 320 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vium2875g00011 | 367 | FunFam | PTI1-like tyrosine-protein kinase At3g15890 | 12 | 115 | - | - | |
Vium2875g00011 | 367 | PANTHER | OS01G0253100 PROTEIN | 21 | 316 | - | - | |
Vium2875g00011 | 367 | Gene3D | Transferase(Phosphotransferase) domain 1 | 116 | 328 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vium2875g00011 | Vium-Chr2875 | 58404 | 61348 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vium2875g00011 | 28 | 314 | Trihelix Transcription Factor Family | AT1G70460 | 51.203 | 8.04e-96 | 298 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_RLCK-XV | Vium2875g00011 | Pkinase | 1.5e-44 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vium2875g00011 | - | - | gmx:100788153 | 694.115 |