Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2875g00007 ATGGCCGCTGCAACCCTCTCTCTGCTTCCTCCCTCCACGTGTCCCTGCTTCTGCGGCACCGTCCATCTCCGCTCTCACAACAGCTTCATTTCCATTCATTCTCCTTCCTTTTCAACTTCCTTCTCCTCGGTTTCCAATCCCAACCTCGCTCCCACGCGCCGCCGCTTCCACACTGTCTTCGCCGCTTCCTCCGACTACTATTCCACTCTCGGAATCTCCAAATCCGCCACAGGAAAGGAAATCAAAGCTGCTTATCGAAAGTTAGCTCGTCAGTATCATCCTGATGTAAATAAGGAGCCCGGTGCGACTGAAAAGTTCAAAGAGATTAGTGCTGCGTATGAGGTGCTATCAGATGATAAAAAGAGGGCTTTATATGATCAATATGGCGAGGCAGGAGTTAAGAGTGCAGTTGGAGGAGGCTCAAGTGCCTACACGACAAATCCTTTTGATTTATTTGAGACATTTTTTGGGCCAAGTATGGGTGGCTTTGGAGGCATGGATCCGACTGGATTTGGAACTCGTCGTCGTAGTACTGTTACTAAGGGTGAAGACATTCGGTATGATTTTTCCTTGGAGTTTTCTGAGGCAATTTTTGGAACAGAGAAAGAATTCGATCTTTCTCATTTGGAAACATGTGAAGTCTGCACTGGTACCGGAGCAAAAATAGGCTCCAAGATGAGAGTATGTTCAACTTGTGGTGGGAGGGGTCAGGTGATGAGGACTGAACAAACACCTTTTGGGATGTTCTCACAGGTTTCAGTATGTCCAAGCTGTGGAGGGGATGGAGAAGTCATATCTGAATATTGTCGTAAATGCAATGGTGAAGGACGAATACGGATTAAGAAAAATATTAAAGTTAAAGTTCCTCCTGGTGTTAGCTCAGGCAGTATTTTAAGAGTTTCTGGGGAGGGTGATGCTGGACCAAGAGGGGGACCTCCTGGAGATCTTTATGTCTATCTTGACGTGCAAGAGATACCTGGAATTCAAAGGGACGACATTAATCTCTCCTCAACAATATCAATCAGTTATCTAGATGCAATACTGGGGGCTGTTGTGAAGGTAAAAACAGTTGAAGGAATTTCGGAACTACAAATACCTGCTGGTACCCAACCCGGAGATGTCCTCGTCCTTGCAAGAAAAGGTGTACCAAAATTAAATAAACCATCAATTCGTGGTGACCACTTATTCACTGTTAAGGTTACAATACCAAAACGTATTAGTACAAAGGAACGTGAGTTGCTTGAAGAACTTGGTTCTCTAGGTGACGCAAGCAAACGTTTAAAATCTCGGCCTAAGACCCACTCTTCAAGTGTTACGGAAACTCCTACACTTCAAAAGGATGAAAGTCCAACAGTAACATCAGAAGAAAAAAGTGAGAAATCAGAAGACGAAAACGATGTATGGAATAAATTGAAGGACTTTGCTGGATCTGTGGCAAATGGAGCTTTCAAGTGGCTGAAAGATAATCTCTAG 1473 0.444 MAAATLSLLPPSTCPCFCGTVHLRSHNSFISIHSPSFSTSFSSVSNPNLAPTRRRFHTVFAASSDYYSTLGISKSATGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRALYDQYGEAGVKSAVGGGSSAYTTNPFDLFETFFGPSMGGFGGMDPTGFGTRRRSTVTKGEDIRYDFSLEFSEAIFGTEKEFDLSHLETCEVCTGTGAKIGSKMRVCSTCGGRGQVMRTEQTPFGMFSQVSVCPSCGGDGEVISEYCRKCNGEGRIRIKKNIKVKVPPGVSSGSILRVSGEGDAGPRGGPPGDLYVYLDVQEIPGIQRDDINLSSTISISYLDAILGAVVKVKTVEGISELQIPAGTQPGDVLVLARKGVPKLNKPSIRGDHLFTVKVTIPKRISTKERELLEELGSLGDASKRLKSRPKTHSSSVTETPTLQKDESPTVTSEEKSEKSEDENDVWNKLKDFAGSVANGAFKWLKDNL 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2875g00007 490 CDD DnaJ 65 118 IPR001623 -
Vium2875g00007 490 NCBIfam molecular chaperone DnaJ 65 418 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Vium2875g00007 490 Gene3D DnaJ domain 62 166 IPR036869 -
Vium2875g00007 490 MobiDBLite consensus disorder prediction 434 449 - -
Vium2875g00007 490 Gene3D - 212 276 - -
Vium2875g00007 490 ProSiteProfiles Zinc finger CR-type profile. 199 281 IPR001305 GO:0031072|GO:0051082
Vium2875g00007 490 Pfam DnaJ central domain 212 276 IPR001305 GO:0031072|GO:0051082
Vium2875g00007 490 SUPERFAMILY Chaperone J-domain 61 171 IPR036869 -
Vium2875g00007 490 FunFam Chaperone protein dnaJ A6 chloroplastic 62 168 - -
Vium2875g00007 490 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 199 279 IPR036410 -
Vium2875g00007 490 MobiDBLite consensus disorder prediction 450 466 - -
Vium2875g00007 490 FunFam Putative Mitochondrial DnaJ chaperone 270 318 - -
Vium2875g00007 490 Gene3D - 328 419 - -
Vium2875g00007 490 PRINTS DnaJ domain signature 85 100 IPR001623 -
Vium2875g00007 490 PRINTS DnaJ domain signature 121 140 IPR001623 -
Vium2875g00007 490 PRINTS DnaJ domain signature 101 121 IPR001623 -
Vium2875g00007 490 PRINTS DnaJ domain signature 67 85 IPR001623 -
Vium2875g00007 490 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 31 427 - -
Vium2875g00007 490 Hamap Chaperone protein DnaJ [dnaJ]. 62 474 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Vium2875g00007 490 FunFam Molecular chaperone Hsp40/DnaJ family protein 328 420 - -
Vium2875g00007 490 Pfam DnaJ C terminal domain 185 403 IPR002939 -
Vium2875g00007 490 SUPERFAMILY HSP40/DnaJ peptide-binding domain 180 333 IPR008971 GO:0006457|GO:0051082
Vium2875g00007 490 CDD DnaJ_zf 212 276 IPR001305 GO:0031072|GO:0051082
Vium2875g00007 490 Gene3D - 182 318 - -
Vium2875g00007 490 Pfam DnaJ domain 65 126 IPR001623 -
Vium2875g00007 490 SMART dnaj_3 64 121 IPR001623 -
Vium2875g00007 490 SUPERFAMILY HSP40/DnaJ peptide-binding domain 329 414 IPR008971 GO:0006457|GO:0051082
Vium2875g00007 490 ProSitePatterns Nt-dnaJ domain signature. 106 125 IPR018253 -
Vium2875g00007 490 FunFam Chaperone protein dnaJ A6 chloroplastic 212 276 - -
Vium2875g00007 490 CDD DnaJ_C 183 406 - -
Vium2875g00007 490 MobiDBLite consensus disorder prediction 424 466 - -
Vium2875g00007 490 ProSiteProfiles dnaJ domain profile. 65 129 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2875g00007 Vium-Chr2875 28618 35803 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2875g00007 66 172 C2H2 Transcription Factor Family AT1G74250 38.596 7.10e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2875g00007 K03686 - gmx:100798567 817.764