Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2873g00007 ATGAATATGATGCGAAGGTTGAAAAGCATTGCTTCCGGGAGGACTTCCATTTCATCAGATTCTGTAGGTGATTCTACCACAAAAAGACCTAAGTTTGATCAAGGAACCGAAGAAAAGGTCTTTGAGGAAACATATTCTATGGAGAAATGTGGAAAAGATCACGAGCAGTATGGAGATGCATTGGCAGAAAGTGTTAATTCCAATAATGCTACAACCAGATCTGAGAAGTCAGGTTATGATCAACTTCCAAAGGAATTAAATGAAATGAAAATTGGAGACGACAAAGGAAAAAATAACAATGAAAAGGATATGGAAGCCACTGTTGTAAATGGTAATGGAACAGAAACAGGCCAACTAATTACAACTGTTATTGGTGGTCGAGATGGACAACCAAAGCGGACAATCTCGTACATGGCAGAACGCATAGTTGGCACAGGTTCTTTTGGTGTTGTTTATCAGGCCAAGTGCATTGAAACTGGTGAAGCAGTTGCCATAAAAAAAGTATTGCAAGACAAGAGATATAAGAATAGGGAACTACAGGTTATGCGTATACTTGACCATAATAATGTTCTCAGACTAAAGCACTGTTTCTACTCAGCCGCGGAGAAAGATGAGTTGTACCTTAACCTAGTTTTGGAGTATGTGCCTGAAACAGTCTACAGAGTTTCCAAGCACTATATCAGAATGCACCAACATATGCCTATCATTTATGTGCAACTGTATTTGTACCAGATATGCCGGGGTTTAAATTATTTGCATCACGTGATTGGAGTCTGTCATAGGGACATCAAGCCCCAGAATCTATTGGTTAATCCCCAGAGTCATCAGTTAAAGATATGTGATTTTGGGAGTGCAAAGATGTTGGTGCCTGGCGAACCCAACATATCATACATATGCTCGCGGTATTACAGAGCTCCAGAGCTTATATTTGGTGCAACAGAATACACAACTGCTATTGATATTTGGTCTGCTGGCTGTGTTATGGCTGAGCTTCTTCTAGGACATCCAATGTTTCCTGGAGAGAGTGGTGTTGATCAGTTGGTTGAGATCATTAAGATCTTGGGAACACCAACCAGAGAAGAAATAAAGTGCATGAATCCAAATTACACTGAATTTAAGTTTCCTCAGATAAAAGCTCACCCGTGGCACAAGGTTAGCGGTTCTTTACTTCTTTGTGCCCCCACTTGA 1188 0.404 MNMMRRLKSIASGRTSISSDSVGDSTTKRPKFDQGTEEKVFEETYSMEKCGKDHEQYGDALAESVNSNNATTRSEKSGYDQLPKELNEMKIGDDKGKNNNEKDMEATVVNGNGTETGQLITTVIGGRDGQPKRTISYMAERIVGTGSFGVVYQAKCIETGEAVAIKKVLQDKRYKNRELQVMRILDHNNVLRLKHCFYSAAEKDELYLNLVLEYVPETVYRVSKHYIRMHQHMPIIYVQLYLYQICRGLNYLHHVIGVCHRDIKPQNLLVNPQSHQLKICDFGSAKMLVPGEPNISYICSRYYRAPELIFGATEYTTAIDIWSAGCVMAELLLGHPMFPGESGVDQLVEIIKILGTPTREEIKCMNPNYTEFKFPQIKAHPWHKVSGSLLLCAPT 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2873g00007 395 FunFam Glycogen synthase kinase-3 beta 121 216 - -
Vium2873g00007 395 ProSiteProfiles Protein kinase domain profile. 137 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2873g00007 395 ProSitePatterns Protein kinases ATP-binding region signature. 143 167 IPR017441 GO:0005524
Vium2873g00007 395 ProSitePatterns Serine/Threonine protein kinases active-site signature. 258 270 IPR008271 GO:0004672|GO:0006468
Vium2873g00007 395 MobiDBLite consensus disorder prediction 9 25 - -
Vium2873g00007 395 MobiDBLite consensus disorder prediction 78 100 - -
Vium2873g00007 395 FunFam Shaggy-related protein kinase kappa 217 390 - -
Vium2873g00007 395 MobiDBLite consensus disorder prediction 64 100 - -
Vium2873g00007 395 Gene3D Transferase(Phosphotransferase) domain 1 217 390 - -
Vium2873g00007 395 Pfam Protein kinase domain 137 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2873g00007 395 SMART serkin_6 137 383 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2873g00007 395 Gene3D Phosphorylase Kinase; domain 1 123 216 - -
Vium2873g00007 395 MobiDBLite consensus disorder prediction 26 40 - -
Vium2873g00007 395 SUPERFAMILY Protein kinase-like (PK-like) 136 382 IPR011009 -
Vium2873g00007 395 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 101 385 - -
Vium2873g00007 395 CDD STKc_GSK3 132 385 IPR039192 -
Vium2873g00007 395 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2873g00007 Vium-Chr2873 85228 89223 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2873g00007 137 362 MAP Kinase Gene Family AT5G19010 38.819 2.47e-46 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Vium2873g00007 Pkinase 1.2e-57 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2873g00007 K27414 - gmx:100786458 715.687