Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2873g00006 ATGAATATGATGCGAAGGTTGAAAAGCATTGCTTCCGGGAGGACTTCCATTTCATCAGATTCTGTAGGTGATTCTACCACAAAAAGACCTAAGTTTGATCAAGGAACCGAAGAAAAGGTCTTTGAGGAAACATATTCTATGGAGAAATGTGGAAAAGATCACGAGCAGTATGGAGATGCATTGGCAGAAAGTGTTAATTCCAATAATGCTACAACCAGATCTGAGAAGTCAGGTTATGATCAACTTCCAAAGGAATTAAATGAAATGAAAATTGGAGACGACAAAGGAAAAAATAACAATGAAAAGGATATGGAAGCCACTGTTGTAAATGGTAATGGAACAGAAACAGGCCAACTAATTACAACTGTTATTGGTGGTCGAGATGGACAACCAAAGCGGACAATCTCGTACATGGCAGAACGCATAGTTGGCACAGGTTCTTTTGGTGTTGTTTATCAGGCCAAGTGCATTGAAACTGGTGAAGCAGTTGCCATAAAAAAAGTATTGCAAGACAAGAGATATAAGAATAGGGAACTACAGGTTATGCGTATACTTGACCATAATAATGTTCTCAGACTAAAGCACTGTTTCTACTCAGCCGCGGAGAAAGATGAGTTGTACCTTAACCTAGTTTTGGAGTATGTGCCTGAAACAGTCTACAGAGTTTCCAAGCACTATATCAGAATGCACCAACATATGCCTATCATTTATGTGCAACTGTATTTGTACCAGATATGCCGGGGTTTAAATTATTTGCATCACGTGATTGGAGTCTGTCATAGGGACATCAAGCCCCAGAATCTATTGGTTAATCCCCAGAGTCATCAGTTAAAGATATGTGATTTTGGGAGTGCAAAGATGTTGGTGCCTGGCGAACCCAACATATCATACATATGCTCGCGGTATTACAGAGCTCCAGAGCTTATATTTGGTGCAACAGAATACACAACTGCTATTGATATTTGGTCTGCTGGCTGTGTTATGGCTGAGCTTCTTCTAGGACATCCAATGTTTCCTGGAGAGAGTGGTGTTGATCAGTTGGTTGAGATCATTAAGATCTTGGGAACACCAACCAGAGAAGAAATAAAGTGCATGAATCCAAATTACACTGAATTTAAGTTTCCTCAGATAAAAGCTCACCCGTGGCACAAGGTTTTCCACAAGAAGATGCCAGCAGAAGCAGTGGATCTAGTGTCGAGGATGCTTCAGTATTCACCAAATCTACGTTGCACTGCTTTGGAGGCTTGTGCACACCCTTTCTTTGATGATCTGCGAGATCCAAATGCATGCTTGCCAAATGGTCGACCACTGCCTCCGTTGTTTGATTTCAGTGCACAAGAACTAGCAGGCAAACCGGAAGAGTTGCGTCGACGTCTCATTCCTGATCATGCAAGAAGTTGA 1401 0.4154 MNMMRRLKSIASGRTSISSDSVGDSTTKRPKFDQGTEEKVFEETYSMEKCGKDHEQYGDALAESVNSNNATTRSEKSGYDQLPKELNEMKIGDDKGKNNNEKDMEATVVNGNGTETGQLITTVIGGRDGQPKRTISYMAERIVGTGSFGVVYQAKCIETGEAVAIKKVLQDKRYKNRELQVMRILDHNNVLRLKHCFYSAAEKDELYLNLVLEYVPETVYRVSKHYIRMHQHMPIIYVQLYLYQICRGLNYLHHVIGVCHRDIKPQNLLVNPQSHQLKICDFGSAKMLVPGEPNISYICSRYYRAPELIFGATEYTTAIDIWSAGCVMAELLLGHPMFPGESGVDQLVEIIKILGTPTREEIKCMNPNYTEFKFPQIKAHPWHKVFHKKMPAEAVDLVSRMLQYSPNLRCTALEACAHPFFDDLRDPNACLPNGRPLPPLFDFSAQELAGKPEELRRRLIPDHARS 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2873g00006 466 SUPERFAMILY Protein kinase-like (PK-like) 136 445 IPR011009 -
Vium2873g00006 466 FunFam Shaggy-related protein kinase kappa 217 465 - -
Vium2873g00006 466 ProSitePatterns Protein kinases ATP-binding region signature. 143 167 IPR017441 GO:0005524
Vium2873g00006 466 Gene3D Phosphorylase Kinase; domain 1 123 216 - -
Vium2873g00006 466 ProSitePatterns Serine/Threonine protein kinases active-site signature. 258 270 IPR008271 GO:0004672|GO:0006468
Vium2873g00006 466 Gene3D Transferase(Phosphotransferase) domain 1 217 465 - -
Vium2873g00006 466 MobiDBLite consensus disorder prediction 9 25 - -
Vium2873g00006 466 MobiDBLite consensus disorder prediction 78 100 - -
Vium2873g00006 466 CDD STKc_GSK3 132 424 IPR039192 -
Vium2873g00006 466 MobiDBLite consensus disorder prediction 64 100 - -
Vium2873g00006 466 Pfam Protein kinase domain 137 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2873g00006 466 ProSiteProfiles Protein kinase domain profile. 137 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2873g00006 466 MobiDBLite consensus disorder prediction 26 40 - -
Vium2873g00006 466 FunFam Glycogen synthase kinase-3 beta 121 216 - -
Vium2873g00006 466 SMART serkin_6 137 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2873g00006 466 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 101 465 - -
Vium2873g00006 466 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2873g00006 Vium-Chr2873 84223 89216 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2873g00006 143 424 Core Cell Cycle Gene Families AT1G76540 35.593 7.60e-55 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Vium2873g00006 Pkinase 2.7e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2873g00006 K27414 - gmx:100786458 870.537