Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2873g00005 ATGCAAAACTCTACTGAATCTTCTCCAGCTTCAGCCGGGCCGGTGGACCCGGTGCCGTTCCTCCCACAAAGCCGCCACGTCGCCCGCCGTGCCCCACTACGAACAGCGACGAGGTTCTTCCGACGCGCGAGCGGGCGGCGCCTTATGCTGGGAGAGGCTTCGGTGCGCGTGCGGGAAGCGGCCGCGGCCGAGGTGGAGGAGCGGCAGAGCGAGTGGGCGTACTCGCGGCCGGTGGTGGCGGTGGACGTCCTGTGGAACACGGCGTTTCTGGTGATCGGTGCGTCGGTGCTGTGGCGGAGCGCTGCGGAGGAGCCGAGCGTGCCTCTCAGGACGTGGATTTTGGGGTATTTAGTGCAGGGAATGATTCACTCTCTCTGCGTCCTGGTTGAGTTCCGAAGGAGAATGATGAGTGGGACCAATTTCCGTTCCAATGTGCCAAACCATGTTGAATGGAGCTTCACTTCTGAAAGTGACCAAGAGTTTTATTATTACGAACCCTCTCTCCAGGGTGATGAAAACTGCATCATAAAATACATAGAGTCGGCAAATACCATGCTTTCATTTATATGGTGGACTGTTGGAGTCTACTGGGTAACTCTTGGTGGCCAGAGTCTGACAACGGATGCACCTCAGCTTTACTGGGTCTCTATCGCATTTCTTTCTTTCGACGTTGTCATTGTACTGATCTGTGTCGCTGTTGCATGCCTTATTGGTATTGCTGTTTGCTGCTGTCTACCATGCATCCTTGCTCTCCTGTACGCAGTGACAGATCAGGAAGGGGCAACGAAGGAAGAGATTGACCAGTTGCCAAAATATAAGTTCAGAATAATAAAAGAAGGTGATATTGAAGAATCTTCAAGAGGAATAATGATCGAATCTGAGAGTGAGACAGCCACAGAACATGTTGTTGCCTTAGAAGATGCAGAATGCTGTATCTGTCTCTCTCCATATGATGATGGTGCTGAAATCAGAGAACTTCCTTGCAACCACCATTTTCATTGCGCATGCATAGACAAATGGCTGCTAATCAATGCTACCTGCCCTCTCTGCAAGCTTGATATTTTGGTTGGTAACCACCATCATGAAGTTTGA 1092 0.5119 MQNSTESSPASAGPVDPVPFLPQSRHVARRAPLRTATRFFRRASGRRLMLGEASVRVREAAAAEVEERQSEWAYSRPVVAVDVLWNTAFLVIGASVLWRSAAEEPSVPLRTWILGYLVQGMIHSLCVLVEFRRRMMSGTNFRSNVPNHVEWSFTSESDQEFYYYEPSLQGDENCIIKYIESANTMLSFIWWTVGVYWVTLGGQSLTTDAPQLYWVSIAFLSFDVVIVLICVAVACLIGIAVCCCLPCILALLYAVTDQEGATKEEIDQLPKYKFRIIKEGDIEESSRGIMIESESETATEHVVALEDAECCICLSPYDDGAEIRELPCNHHFHCACIDKWLLINATCPLCKLDILVGNHHHEV 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2873g00005 363 MobiDBLite consensus disorder prediction 1 21 - -
Vium2873g00005 363 ProSiteProfiles Zinc finger RING-type profile. 310 351 IPR001841 -
Vium2873g00005 363 SMART ring_2 310 350 IPR001841 -
Vium2873g00005 363 SUPERFAMILY RING/U-box 290 356 - -
Vium2873g00005 363 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 289 355 IPR013083 -
Vium2873g00005 363 Pfam Ring finger domain 309 351 IPR001841 -
Vium2873g00005 363 PANTHER TARGET OF ERK KINASE MPK-1 48 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2873g00005 Vium-Chr2873 65905 70259 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2873g00005 7 361 C3H Transcription Factor Family AT1G68070 45.961 8.66e-109 320