Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium286g00012 ATGGATTATGAGGAATTTGATTTCTCGTTTGGCTATCCTTATATGAACCAACTCCATGAGTGTTGCTTAGAAAATGCATTCCCATTTCAAACAGAAGATATATCATCACCAAATACCATAATGGATGAAATGTTTGGTGAAGAGTCTATGGAGGGCTTGCTTCTGCAACACACAAACAACCAGGACTTTGGTTTCATGAATCACAATGATTCACCAGAGATTGAACTCTGTGATGGATTTGGTTCTAGCCCTGAGGAAAATGTGCATGTTTCAATGGAAGAAGAAGAAGAAGGGGATTGTTATTTGAAGGGAATCCAAGCAGAGGTGATGGAACAGACTAGTTTAGCTGATCTTCTGTTAACAGGAGCTGAAGCTGTTGAAGCACAAAACTGGGACCTTGCTTCATACATAATTGAGAAACTCAACAATGCATCATCTTTAGAAAAGGGTGATGGTCTGTTGAACAGGTTGGCTTTTTTCTTTGCTCAGGGTCTGTATTATAAAAGTACAAATGCCCCTGAACTGTTGTTGCAGCGTGGTGCTGTTTCTACACACACAGATGCTTTCTGTTTGTTTCAGATTCTCCAAGAACTATCTCCATATGTGAAATTTGCTCATTTCACGGCAAACCAAGCAATCTTAGAAGCCACAGAAGGTGTTGAGAATGTTCACATCGTTGATTTTGACATCATGGAGGGAATCCAGTGGCCACCCTTGATGGTTGATCTTGCAATGAGGAAAAACAGTACTACTTCCCTTAGAGTAACAGCGATCACAGTGGACCAGAGAGGTGCTGCTTCTGCTGAACAAACAGGAAGAAGGCTGAAAGAGTTTGCAGCTTCTATAAACTTTCCATTTACGTTTGATCAAACGATGATGGAAAGAGAAGAAGATATTGAAGGAATTGAAGTTGGTGAAACAGTGATAGTGAACTGTATGATAGACCAGTGGATGCCTAACAGGAGCTTCTCACTGGTGAAAACGTTTTTGGATGGTGTGACGAAACTGTGGCCGAGGCTTGTGGTTTTGGTGGAAGAAGAACTGTTTAATTTTTCAAGGCTGAAATCAATGTCCTTTGTGGAGTTCTTCTGCGAGGCTTTGCATCACTACAGTGCAGTTTGTGATTCACTTGGTAGTAGTGTGTGGGGTAGCCACAAGATGGCGTCGAGGCTGATAGAGAAAGAGACTTTGGGGCTCAGAATATTGGACAGTGTGAGGCAGTTTCCTTGTGAGAGAAATGAGAGAAAGGTTTGGGAAGAAGGGTTTTATTCATTGAAAGGGTTTAAATGTGTTCCTATGAGTAGTTGTAATATTTCACAGGCTAAGTTCTTGGTGAGCCTCTTTGGTGGAGGGTATTGGGTCCAATTCGAGAAGGGTAGGTTGGCCTTGTGTTGGAAGTCACGGCCTTTGACTGTGGCTTCAATATGGGTACCCAAGGGTTATTCCAGTCAAAAAGTCAATTAG 1464 0.4194 MDYEEFDFSFGYPYMNQLHECCLENAFPFQTEDISSPNTIMDEMFGEESMEGLLLQHTNNQDFGFMNHNDSPEIELCDGFGSSPEENVHVSMEEEEEGDCYLKGIQAEVMEQTSLADLLLTGAEAVEAQNWDLASYIIEKLNNASSLEKGDGLLNRLAFFFAQGLYYKSTNAPELLLQRGAVSTHTDAFCLFQILQELSPYVKFAHFTANQAILEATEGVENVHIVDFDIMEGIQWPPLMVDLAMRKNSTTSLRVTAITVDQRGAASAEQTGRRLKEFAASINFPFTFDQTMMEREEDIEGIEVGETVIVNCMIDQWMPNRSFSLVKTFLDGVTKLWPRLVVLVEEELFNFSRLKSMSFVEFFCEALHHYSAVCDSLGSSVWGSHKMASRLIEKETLGLRILDSVRQFPCERNERKVWEEGFYSLKGFKCVPMSSCNISQAKFLVSLFGGGYWVQFEKGRLALCWKSRPLTVASIWVPKGYSSQKVN 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium286g00012 487 ProSiteProfiles GRAS family profile. 106 477 IPR005202 -
Vium286g00012 487 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 96 472 IPR005202 -
Vium286g00012 487 Pfam GRAS domain family 116 476 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium286g00012 Vium-Chr286 111831 113382 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium286g00012 115 476 GRAS Transcription Factor Family AT5G41920 33.333 6.84e-43 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vium286g00012 GRAS 2.8e-80 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium286g00012 - - gmx:100804613 783.097