Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium286g00010 ATGAGTTTGGAGGGGACAGGAAGTTCAGAAGATGGTGCAGGTTATCTGGAGCCTCCTGATCCTGACTTTGTTGAAATTGATCCAACTTGCACCTACGTCAAGTACAAAGAAGTGATCGGCAGAGGAGCTTTTAAAACTGTTTACAAGGCATTTGATGGAGTCAATGGAATTGAAGTTGCGTGGAGTCAGGTTCAGATTGATGAGGTTTTGCAATCCCCCGGTGACTTAGATAGGCTATATTCAGAATTACACCTCTTGAGATCACTGAAGCACCATAACATAGTAAGATTCTACAATTCCTGGATTGATGACAAGCGCAGGACCGTTAATATGATTACGGAGTTGTTTACCTCGGGTAGCCTCAAACAGTTTCGTAAAAAACACAAGAAGGTCGACTTGAAGGCCGTTAAAGGATGGGCAAGACAAATTTTAATGGGTCTAAGCTATCTCCACGGTCAGAACCCACCCGTTATTCACAGGGACCTGAAATGTGATAATATATTTATCAATGGTCACCAAGGAGAAGTTAAAATTGGAGATCTTGGGCTAGCAACTTTCTTGAACCGAAGTAATGCCAAGAGTGTTATTGGAACCCCGGAGTTTATGGCACCAGAGCTGTATGATGAAAATTACAATGAATTAGCTGACATATATTCGTTTGGCATGTGCATGCTTGAGTTGGTGACGTCCGAGTATCCTTACAGTGAATGCAGAAACTCGGCTCAGATATACAAGAAAGTTTCATCCGGTATAAAACCTGCTGCGCTTTCTAAAGTGAAAGATCCAGAAATGAAATCATTTATTGAGAAATGTCTAGTCCCGGCATCTCAAAGATTGTCAGCCAAGGAGCTTCTGATGGACCCATTTCTTCAAATGAATGCTTCAACAAAGAAGGGTCCTTCTCCATTGCCGCATATTGTTCTTCCCAAATTGGGAGCCGCTGAAAGTCGTTGTATGGTGTCAGAAGGTCCTTCTAGTGCTCGTAATGGAGACATTTCAATGGATCTTGGTGAGACCTGTGAGCTTCCAGCGATCACTATATATGATAAATCCACTAATGATGCATCACGTTCTACAAGTGTTGAGATAAGAAGGCAGAAGAGAGGTGATATTTTCTTCCTAAAAGGTGAAGAAAATGATAAGAACTCTGTATCATTGGTTCTGCGGATAGCTGATCAAGGAGGGCGAGCAAGAAATATCCATTTCGTTTTCTACCTTGACAGTGACACTGCTGTCTCAGTTTCAAGCGAAATGGTTGAGCAACTTGAGCTTGCTGATCAGAATGTTAAATTCATAGCTTAGTTAATAGATTTGTTATTGATGAATCTGATTGCTGATTGGAAACCTTGTGTAGCAATTGATCACTTGTTTTCTCCTAGTAATAAACAAACTCTTGTGAGCCAACAGGGAGAATTTGAGTTAGCAAAATGCACAGGTAGCTCAAAATATTCGACTGAAGATTTTGGTCCCTCTACCTCCTCTGCAATATTAGCTACAAAAGGAAACCTTGATAATATGGATATCGATGGGGCTTTATCTGACGAGTGCAGTGGTCTTCAGAAAGCAACCAAGGCTGATGATCTATGCTCTGAGAAGACGTATGCATCTGCAACAACTGATTTCAATGATAATAAGTTTTCCACGGTTTCATTTATGTCTGCTAAATCAGAATTTGATGGAGGGAGTCAATCCTCGCCTACATCTGAAATTGGGGCATCGTATGATCGTAAGAGCAAGTTTTTGGACATGAAAGGCTTCTCCAATATTCTGAACATCGCTTCCTCCTCGTCTGAAGCTGAGGGTGAGTTGAAATTAGAGTTACAAATGATTGAACAGAAGTATCAAGAGGCAATGAATGATTTATCCCAAAGAAGATACCAGGCCATCTTGGATATTAGAAGGAGAATGTCACAAAAGATGGTCTCGTAG 1929 0.4106 MSLEGTGSSEDGAGYLEPPDPDFVEIDPTCTYVKYKEVIGRGAFKTVYKAFDGVNGIEVAWSQVQIDEVLQSPGDLDRLYSELHLLRSLKHHNIVRFYNSWIDDKRRTVNMITELFTSGSLKQFRKKHKKVDLKAVKGWARQILMGLSYLHGQNPPVIHRDLKCDNIFINGHQGEVKIGDLGLATFLNRSNAKSVIGTPEFMAPELYDENYNELADIYSFGMCMLELVTSEYPYSECRNSAQIYKKVSSGIKPAALSKVKDPEMKSFIEKCLVPASQRLSAKELLMDPFLQMNASTKKGPSPLPHIVLPKLGAAESRCMVSEGPSSARNGDISMDLGETCELPAITIYDKSTNDASRSTSVEIRRQKRGDIFFLKGEENDKNSVSLVLRIADQGGRARNIHFVFYLDSDTAVSVSSEMVEQLELADQNVKFIAXLIDLLLMNLIADWKPCVAIDHLFSPSNKQTLVSQQGEFELAKCTGSSKYSTEDFGPSTSSAILATKGNLDNMDIDGALSDECSGLQKATKADDLCSEKTYASATTDFNDNKFSTVSFMSAKSEFDGGSQSSPTSEIGASYDRKSKFLDMKGFSNILNIASSSSEAEGELKLELQMIEQKYQEAMNDLSQRRYQAILDIRRRMSQKMVS 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium286g00010 642 FunFam Probable serine/threonine-protein kinase WNK1 18 114 - -
Vium286g00010 642 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 20 633 - -
Vium286g00010 642 Coils Coil 600 620 - -
Vium286g00010 642 MobiDBLite consensus disorder prediction 1 21 - -
Vium286g00010 642 SMART serkin_6 33 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium286g00010 642 Gene3D Phosphorylase Kinase; domain 1 19 114 - -
Vium286g00010 642 Pfam Protein kinase domain 35 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium286g00010 642 ProSiteProfiles Protein kinase domain profile. 33 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium286g00010 642 SUPERFAMILY Protein kinase-like (PK-like) 36 325 IPR011009 -
Vium286g00010 642 ProSitePatterns Serine/Threonine protein kinases active-site signature. 157 169 IPR008271 GO:0004672|GO:0006468
Vium286g00010 642 FunFam probable serine/threonine-protein kinase WNK9 116 295 - -
Vium286g00010 642 Gene3D - 382 457 - -
Vium286g00010 642 CDD STKc_WNK 32 290 - -
Vium286g00010 642 Gene3D Transferase(Phosphotransferase) domain 1 116 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium286g00010 Vium-Chr286 104419 107904 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium286g00010 133 464 MAP Kinase Kinase Kinase AT1G49160 68.675 3.68e-167 483
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Vium286g00010 Pkinase 3.1e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium286g00010 K08867 - gmx:121175054 813.142