Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium286g00008 ATGGTCATGGACGATCTCTACATCACCGTTCCCAGCTTCTTCCGCTGCCCCATATCCCTCGACGTCATGAAATCCCCCGTCAGTCTCTCCACCGGCGTTACCTACGACCGCTCCAGCATCCAGCGCTGGCTCGACAACGGCAACAACACCTGTCCCGCCACCATGCAGGTTCTCCAAACCAAGGAATTTGTTCCTAATCGAACCTTACAGAGGCTCATCCAGATCTGGTCTGACTCCCTCCACCACCCACTCCACTCCGCTCACTCCCCCACCTCCACCCCCTCCCAATCCCTCCCCTCCAAGGACCAAATCCTTCTCGCTATCTCCGACTTGCAGACTCGCGCCGACAACCGCTTCGACTCGCTCGCCAAAATCGCTCGCTTCGCTCAAGATTCCGAAGAGAACCGCGATTTTCTCGTCAAAACGGAATGCTTCGTGCCTCTGCTCGTTGGCTTCCTCCACAATGTCAATGGCGGCGTCGAATTCCTCGAACAGGTCGTTATGGCGTTGGATTTGATTATCGGAAAAATGGAAGATCGTGAGGGGCTGAAAAACTTGATACTGAAGGCGCAGGGCGAGGCAGAAAAACAGAGTCTGGATTCTCTGCTCGTCGCTCTCCGACGAGGGAACCATGCCGCACAGATAGCATCGGTTAGGGTTTTGACGTCGGTCGCCGTGGACGTGGAATCGAAGCTTTTGATAGCGGAGAAGGAAGGTTTAGTGTCCGAATTGCTGAAACTAATCACGCCGGAGAAAGATCCAGATCTAATCGAGAACTGTTTGTCGTGCCTGGTGGCGATTTCGTCTCCGAGACGGAGCAAGATGAAGCTGGTGTGTCTGGGAGCGGTTAAGGTGTTGTCGAAGCTTCTCTGCGCTTCGAACGTGAGCGTGTCGGTGACGGAGAAGGTTCTGAAGCTGGTGGAAACGGTGTCGTCTACGAAGGAAGGGAGGTTGGAGATATGCGAGGATTCAGCGTGCGTGGCGGCGATAGTGAACAAAGTGCTGAAAGTGTCGAGCGTGGCAACGGAACACGCCGTTACGACGCTGTGGAGCGTGTGTTATCTGTTTCGGGATGAGACGGCGCAAGAGGCCGTTACGAAGGCTAACGGCTTGACCAAGATTCTGCTTCTGATGCAGAGTAATTGCTCGCCGCAAGTGCGCCAAATGTCTGCGGATTTGCTCAAGATATTCCGGGTTAATTCCAAGTCGTGTCTTTCATCGTACGACACCAAAACCACTCATATTATGCCCTTTTGA 1257 0.5386 MVMDDLYITVPSFFRCPISLDVMKSPVSLSTGVTYDRSSIQRWLDNGNNTCPATMQVLQTKEFVPNRTLQRLIQIWSDSLHHPLHSAHSPTSTPSQSLPSKDQILLAISDLQTRADNRFDSLAKIARFAQDSEENRDFLVKTECFVPLLVGFLHNVNGGVEFLEQVVMALDLIIGKMEDREGLKNLILKAQGEAEKQSLDSLLVALRRGNHAAQIASVRVLTSVAVDVESKLLIAEKEGLVSELLKLITPEKDPDLIENCLSCLVAISSPRRSKMKLVCLGAVKVLSKLLCASNVSVSVTEKVLKLVETVSSTKEGRLEICEDSACVAAIVNKVLKVSSVATEHAVTTLWSVCYLFRDETAQEAVTKANGLTKILLLMQSNCSPQVRQMSADLLKIFRVNSKSCLSSYDTKTTHIMPF 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium286g00008 418 FunFam RING-type E3 ubiquitin transferase 2 82 - -
Vium286g00008 418 PANTHER WDSAM1 PROTEIN 9 406 IPR045185 GO:0061630
Vium286g00008 418 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Vium286g00008 418 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Vium286g00008 418 Gene3D - 107 407 IPR011989 -
Vium286g00008 418 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 87 IPR013083 -
Vium286g00008 418 CDD RING-Ubox_PUB 11 63 IPR045210 -
Vium286g00008 418 Pfam U-box domain 10 77 IPR003613 GO:0004842|GO:0016567
Vium286g00008 418 SUPERFAMILY RING/U-box 4 78 - -
Vium286g00008 418 SUPERFAMILY ARM repeat 116 400 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium286g00008 Vium-Chr286 69489 71257 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium286g00008 1 418 U-box Gene Family AT5G09800 54.374 4.34e-143 412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium286g00008 - - vra:106764800 754.977