Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2868g00005 ATGGATCAACGTGAAGAAGGCAAACAACAACCATCCCAGAAAACAGCATCAGAAAATCAGCTTGACCCAGTTGATAGTTCTGACAATATTGCTCCAGAAAATGGTTTTCAGGAGCAAAGTGGCACATTCACAACGTTTGCATCATTAGAAAGTGGAACTGAGAGTGAGTCCTCTTTCGATGACCATGATGAAGATTCTGACTTTTTTCTGAGCCAGGAGTTTGAATCTGAACTTCAGTTTCTCGAGAGCGAAGGGAGCAATGATGATGATGATGATGATGATGAGGAAATGGAGGAAGATGAGATCGATGTGGATGAGTTGACCTATGAGGAGTTGATTGAGTTGGGAGATTTTATAGGGCGAGAGAAGAGAGGGTTATCGGCAAGTGAAATTTGTTCATGCTTGCATTCTCACACTTTTCATTCTGCAGAAAGCAAAAGTGGAGTTGATCTTTGTGTGATTTGCCAGGTTGAATATAAAGAAGGTGAAGCCCTTGTAGCAATTCAGTGTGAGCACCCTTATCATACAGATTGCATAAGCAAGTGGCTTCAAATTAAGAAGGTTTGCCCTATATGTAACACTGAAATTTCTGCTCCCAAGGTAGTTAATTAA 612 0.4085 MDQREEGKQQPSQKTASENQLDPVDSSDNIAPENGFQEQSGTFTTFASLESGTESESSFDDHDEDSDFFLSQEFESELQFLESEGSNDDDDDDDEEMEEDEIDVDELTYEELIELGDFIGREKRGLSASEICSCLHSHTFHSAESKSGVDLCVICQVEYKEGEALVAIQCEHPYHTDCISKWLQIKKVCPICNTEISAPKVVN 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2868g00005 203 ProSiteProfiles Zinc finger RING-type profile. 152 193 IPR001841 -
Vium2868g00005 203 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 127 200 IPR013083 -
Vium2868g00005 203 MobiDBLite consensus disorder prediction 80 103 - -
Vium2868g00005 203 MobiDBLite consensus disorder prediction 1 68 - -
Vium2868g00005 203 Pfam RING-H2 zinc finger domain 150 193 IPR024766 GO:0008270
Vium2868g00005 203 MobiDBLite consensus disorder prediction 82 103 - -
Vium2868g00005 203 SUPERFAMILY RING/U-box 113 199 - -
Vium2868g00005 203 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 25 197 IPR033276 GO:0004842|GO:0016567|GO:0046621
Vium2868g00005 203 FunFam E3 ubiquitin ligase BIG BROTHER-related 118 199 - -
Vium2868g00005 203 SMART ring_2 152 192 IPR001841 -
Vium2868g00005 203 MobiDBLite consensus disorder prediction 12 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2868g00005 Vium-Chr2868 59683 60681 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2868g00005 86 196 C3H Transcription Factor Family AT3G63530 47.368 5.42e-29 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2868g00005 K19045 - gmx:100780686 278.485