Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vium2862g00002 | ATGGCTGCCCTTTCATGTTTCATTCTTCTTTTTGCTCTTTCTCTTCTCACACCCTCTTTTGTTTCTTCCTCTGCAGTTCCAGACCCTGAATTGGTTGTTCAAGAGGTACAAAGAAGCATCAATGCCTCAAGGAGAAACTTGGGTTATTTATCATGCGGAACCGGGAATCCCATCGACGACTGCTGGCGGTGCAACCCAAACTGGGAGAACAACCGCCAGAGACTAGCGGACTGCGCCATCGGGTTCGGCAAGGACGCCATCGGCGGAAGAAACGGCCGAATATACGAGGTCACAGACTCCGGCAACGACGACGCCGTGAACCCAAAGCCGGGAACCCTCCGTTACGCCGCCATACAAGACGAACCCCTGTGGATAATCTTCAAGAGGGACATGGTCATCACGCTAAAGCAAGAGCTTCTGGTGAACTCTTTCAAGACAATCGACGGCAGAGGCGCGAGCGTGCACATCGCCGGCGGGGGCTGCATCACCATACACTACGTAAGCAACGTGATCGTTCATGGGATTCACATTCACGATTGCAAGCCCACCGGGAACACCAACATCAGAGACTCGCCGGAGCACTCCGGGTTTTGGACGAAATCGGACGGCGACGGAATCTCCATCTTTAACTCGAAGCATATTTGGATCGATCATAACTCGCTGTCGAATTGTCAGGATGGGCTGATCGATGCCATTCATGGATCCACCGCCATCACCATCTCCAACAATTACATGACCCACCATGACAAGGTTATGCTTTTGGGACACAGTGATTCCTACACGCAGGACAAGAACATGCAGGTCACCATAGCCTTCAATCATTTTGGAGAAGGTCTTGTCCAAAGAATGCCAAGATGCAGACACGGGTATTTTCATGTGGTGAACAACGACTACACACACTGGGAAATGTATGCCATTGGAGGGAGTGCGAACCCGACCATCAACAGCCAAGGAAACAGGTTTCTTGCTCCAGACATTAGGTTCAGCAAAGAGGTAACAAAGCATGAGGATGCTCCACAGAGTGAGTGGATGAGCTGGAATTGGAGATCAGAGGGTGACATGTTCTTGAATGGAGCATACTTCAGGCAATCTGGTGCTGGTGCTTCTTCCATCTATGCTAGAGCTTCAAGTCTCAGTGCAAGACCTTCTTCTCTTGTTGGATCCATGACCGTCACTGCTGGTGCACTTACCTGCAGAAAGGGAAACCGTTGCTGA | 1215 | 0.507 | MAALSCFILLFALSLLTPSFVSSSAVPDPELVVQEVQRSINASRRNLGYLSCGTGNPIDDCWRCNPNWENNRQRLADCAIGFGKDAIGGRNGRIYEVTDSGNDDAVNPKPGTLRYAAIQDEPLWIIFKRDMVITLKQELLVNSFKTIDGRGASVHIAGGGCITIHYVSNVIVHGIHIHDCKPTGNTNIRDSPEHSGFWTKSDGDGISIFNSKHIWIDHNSLSNCQDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPDIRFSKEVTKHEDAPQSEWMSWNWRSEGDMFLNGAYFRQSGAGASSIYARASSLSARPSSLVGSMTVTAGALTCRKGNRC | 404 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vium2862g00002 | 404 | Gene3D | - | 55 | 397 | IPR012334 | - | |
Vium2862g00002 | 404 | FunFam | Pectate lyase | 55 | 397 | - | - | |
Vium2862g00002 | 404 | SMART | amb_all | 130 | 327 | IPR002022 | - | |
Vium2862g00002 | 404 | PANTHER | PECTATE LYASE 18-RELATED | 23 | 402 | IPR045032 | GO:0030570 | |
Vium2862g00002 | 404 | SUPERFAMILY | Pectin lyase-like | 39 | 398 | IPR011050 | - | |
Vium2862g00002 | 404 | PRINTS | Pollen allergen Amb family signature | 78 | 95 | IPR018082 | - | |
Vium2862g00002 | 404 | PRINTS | Pollen allergen Amb family signature | 282 | 301 | IPR018082 | - | |
Vium2862g00002 | 404 | PRINTS | Pollen allergen Amb family signature | 138 | 154 | IPR018082 | - | |
Vium2862g00002 | 404 | PRINTS | Pollen allergen Amb family signature | 202 | 223 | IPR018082 | - | |
Vium2862g00002 | 404 | PRINTS | Pollen allergen Amb family signature | 346 | 370 | IPR018082 | - | |
Vium2862g00002 | 404 | PRINTS | Pollen allergen Amb family signature | 304 | 323 | IPR018082 | - | |
Vium2862g00002 | 404 | PRINTS | Pollen allergen Amb family signature | 375 | 398 | IPR018082 | - | |
Vium2862g00002 | 404 | PRINTS | Pollen allergen Amb family signature | 102 | 127 | IPR018082 | - | |
Vium2862g00002 | 404 | Pfam | Pectate lyase | 137 | 321 | IPR002022 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vium2862g00002 | Vium-Chr2862 | 21983 | 26157 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vium2862g00002 | 7 | 404 | Polysaccharide Lyase | AT5G63180 | 74.627 | 0.0 | 624 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vium2862g00002 | K01728 | - | gmx:100794814 | 791.186 |