Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2862g00002 ATGGCTGCCCTTTCATGTTTCATTCTTCTTTTTGCTCTTTCTCTTCTCACACCCTCTTTTGTTTCTTCCTCTGCAGTTCCAGACCCTGAATTGGTTGTTCAAGAGGTACAAAGAAGCATCAATGCCTCAAGGAGAAACTTGGGTTATTTATCATGCGGAACCGGGAATCCCATCGACGACTGCTGGCGGTGCAACCCAAACTGGGAGAACAACCGCCAGAGACTAGCGGACTGCGCCATCGGGTTCGGCAAGGACGCCATCGGCGGAAGAAACGGCCGAATATACGAGGTCACAGACTCCGGCAACGACGACGCCGTGAACCCAAAGCCGGGAACCCTCCGTTACGCCGCCATACAAGACGAACCCCTGTGGATAATCTTCAAGAGGGACATGGTCATCACGCTAAAGCAAGAGCTTCTGGTGAACTCTTTCAAGACAATCGACGGCAGAGGCGCGAGCGTGCACATCGCCGGCGGGGGCTGCATCACCATACACTACGTAAGCAACGTGATCGTTCATGGGATTCACATTCACGATTGCAAGCCCACCGGGAACACCAACATCAGAGACTCGCCGGAGCACTCCGGGTTTTGGACGAAATCGGACGGCGACGGAATCTCCATCTTTAACTCGAAGCATATTTGGATCGATCATAACTCGCTGTCGAATTGTCAGGATGGGCTGATCGATGCCATTCATGGATCCACCGCCATCACCATCTCCAACAATTACATGACCCACCATGACAAGGTTATGCTTTTGGGACACAGTGATTCCTACACGCAGGACAAGAACATGCAGGTCACCATAGCCTTCAATCATTTTGGAGAAGGTCTTGTCCAAAGAATGCCAAGATGCAGACACGGGTATTTTCATGTGGTGAACAACGACTACACACACTGGGAAATGTATGCCATTGGAGGGAGTGCGAACCCGACCATCAACAGCCAAGGAAACAGGTTTCTTGCTCCAGACATTAGGTTCAGCAAAGAGGTAACAAAGCATGAGGATGCTCCACAGAGTGAGTGGATGAGCTGGAATTGGAGATCAGAGGGTGACATGTTCTTGAATGGAGCATACTTCAGGCAATCTGGTGCTGGTGCTTCTTCCATCTATGCTAGAGCTTCAAGTCTCAGTGCAAGACCTTCTTCTCTTGTTGGATCCATGACCGTCACTGCTGGTGCACTTACCTGCAGAAAGGGAAACCGTTGCTGA 1215 0.507 MAALSCFILLFALSLLTPSFVSSSAVPDPELVVQEVQRSINASRRNLGYLSCGTGNPIDDCWRCNPNWENNRQRLADCAIGFGKDAIGGRNGRIYEVTDSGNDDAVNPKPGTLRYAAIQDEPLWIIFKRDMVITLKQELLVNSFKTIDGRGASVHIAGGGCITIHYVSNVIVHGIHIHDCKPTGNTNIRDSPEHSGFWTKSDGDGISIFNSKHIWIDHNSLSNCQDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPDIRFSKEVTKHEDAPQSEWMSWNWRSEGDMFLNGAYFRQSGAGASSIYARASSLSARPSSLVGSMTVTAGALTCRKGNRC 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2862g00002 404 Gene3D - 55 397 IPR012334 -
Vium2862g00002 404 FunFam Pectate lyase 55 397 - -
Vium2862g00002 404 SMART amb_all 130 327 IPR002022 -
Vium2862g00002 404 PANTHER PECTATE LYASE 18-RELATED 23 402 IPR045032 GO:0030570
Vium2862g00002 404 SUPERFAMILY Pectin lyase-like 39 398 IPR011050 -
Vium2862g00002 404 PRINTS Pollen allergen Amb family signature 78 95 IPR018082 -
Vium2862g00002 404 PRINTS Pollen allergen Amb family signature 282 301 IPR018082 -
Vium2862g00002 404 PRINTS Pollen allergen Amb family signature 138 154 IPR018082 -
Vium2862g00002 404 PRINTS Pollen allergen Amb family signature 202 223 IPR018082 -
Vium2862g00002 404 PRINTS Pollen allergen Amb family signature 346 370 IPR018082 -
Vium2862g00002 404 PRINTS Pollen allergen Amb family signature 304 323 IPR018082 -
Vium2862g00002 404 PRINTS Pollen allergen Amb family signature 375 398 IPR018082 -
Vium2862g00002 404 PRINTS Pollen allergen Amb family signature 102 127 IPR018082 -
Vium2862g00002 404 Pfam Pectate lyase 137 321 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2862g00002 Vium-Chr2862 21983 26157 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2862g00002 7 404 Polysaccharide Lyase AT5G63180 74.627 0.0 624
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2862g00002 K01728 - gmx:100794814 791.186