Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2861g00028 ATGACTAGACCATTTGGAGAATTGACAAGCAATAACAGTGCCGCTGGAAGGATGAGTACTGAACTATCTGAATTGTCTGAAAAAACACAGTTATGGACTGAGCATTTACTAAAGGAACAATGGGAGTCTGGTACTGTGTTAACCAGTTCAGTTATCCATGAAAAATCAAATCAAGTTTCTGCTAATGCGACAGAGAATTCTGTTATTTTACTGCCTGCACCACCTCAACATGACTCAGAAAAGAATTGTCAGACTGTAGAAGGTTCACACCTGCAACAAAGTACCGATAAAGAAGTCTCTTTACAGTTATCTAACGACAAGCCAGAAAACCCATCCCAACCATTGTCTGAAAACGAACCTGTGGAATCCGTTTCTGCCTCTGCTGGGGATGGCCAAAAGCAATTCAGTCCAGCTCAAGCGAATACAAGTTATGTGAATAAATTGTTGGATCCACCTTCTGAAGATGTTGTGACCAGTATTTCAGAAAAAGTGTCTAATAGCCCCGCTAATTCGCAATTGAGGCGCAAGGGTAAAAAAAACTCAAAATTGTTGAAGAAGACATATATGCTACGATCAATAGGAAGCAGTGACAGAGCTTTGCGGTCAAAAACAAAAGAAAATCCCAAGACACCTGAACCAAGTAGTAATTTGGTTGATTTTAATAATAATAATAATAGCAATGGTGGAGGGAAGAGGAAAACTAGTAGGAAGAAGAGAAAGAGTGGAGAGGTTGGAATCACTGATCAATTCTCCAGAATCAAATCTCACTTAAGATATTTATTAAACAGAATAAGCTACGAGAAAAGCTTGATTGATGCTTATTCTGGCGAAGGCTGGAAAGGATACAGTATGGAAAAATTGAAGCCTGAGAAAGAACTTCAACGGGCCAAGTCTGAAATTCTTCGACGCAAATTGAACATTAGGGATCTATTTCGAGATTTGGATTCATTGTGTGCTGAAGGAAAGCTACCAGAGTCTTTATTTGATTCTGAGGGAGAGATTGACAGTGAGGATATATTCTGTGCAAAATGCCATTCCAAAGAGTTGAGTTCTAATAATGATATAATTCTCTGTGATGGTGTCTGTGACCGAGGCTTTCACCAGCTCTGTTTGTGTCCTCCGTTGTTAACTGAAGACATTCCACCTGATGATGAGGGTTGGTTATGCCCTGGATGTGATTGCAAAGATGACTGCATGGACCTTATTAATGACTCCTTCGGAACAAGTCTCTCTATTAGTGACACCTGGGAGAGCGTTTTTCCTGAAGCAGCAGCAGCTGCTGGGAATAATATGGATAACAACTTGGGACTCCCTTCTGATGATTCTGATGATGATGATTATAACCCTAATGGTCCAGAGGATTTGAAAATTGAAGGAGATGAATCAAGTTCTAAGGAATCTGACTATGCTTCTGCTTCTGAGAATTTGGAGGGTTCACATGGGGATCAATACTTGGGCCTTCCATCTGAAGATTCTGATGATGGTGATTATGACCCTGATGCTCCAGATGTTGACAATAAGGTCAATGAAGAAAGTTCAAGCTCTGATTTCACATCTGACTCTGAGGATCTTGCCGCTGCAATTGTGGATAACACATCCCCTGGACAGGATGAGGAAATCAGATCTGCATCATTGGATGATGTTAAGCACTTGAGAAGTTATGGCAAAAAAAAGAGTAAAGCTGGTAAGAAGCTATCTATGGCTGATGAACTGTCTTCTTTACTAGAGCCAGATTCTAGTCAAGAAGGTTCTATACTTGTTTCTGGGAAAAGGAATTTGGAAAGGTTGGACTACAAAAAGTTGTATGATGAAACATACCATAGCGATACTAGTGAAGATGAAGATTGGACAGCCACTGTTACTCCTAGCAGAAAGAAGAAAGACAATGCGACTCCTGTGTCTCCAAATGGAAATGCTTCAAATAATTCTTCCATGCACACTCCTAAGAGGAATGGCCATCGGAATAAATTTGAAAATACAAAAAATTCACCTGCCAAATCACTGGATCGCGATGTGAAATTTGATTCCAGGGAACAAACGTCTAGATCTCCAGGAGGCAATAGACTACGAGAAGCAGTAGTTCAGAGACTTCACATATCTTTTAAAGAAAATCAGTATCCAGATAGAGCTACTAAAGAAAGCTTGGCACAGGAACTTGGACTTACTTATCAGCAGGTTGGCAAATGGTTTGACAATACACGATGGAGCTTCCGGCACTCATCACAAGCTAATTCAGGTAGAAATACATTACGGAAAGCTACTGATAGCAGAGCTGAAAATGAATGTGAATCCCCGGAGGTCAGTGGAGAAAAAGCAAAAGCCCCAAGCTCTGGAAAAAGAAAGCATTTGTCAGAAAACCAACTATCTGAAGACAATGCTCATCAAACCCAAAGGGGGAAGAAAATGAAGACAAGGAGAAGGAAATGA 2427 0.4042 MTRPFGELTSNNSAAGRMSTELSELSEKTQLWTEHLLKEQWESGTVLTSSVIHEKSNQVSANATENSVILLPAPPQHDSEKNCQTVEGSHLQQSTDKEVSLQLSNDKPENPSQPLSENEPVESVSASAGDGQKQFSPAQANTSYVNKLLDPPSEDVVTSISEKVSNSPANSQLRRKGKKNSKLLKKTYMLRSIGSSDRALRSKTKENPKTPEPSSNLVDFNNNNNSNGGGKRKTSRKKRKSGEVGITDQFSRIKSHLRYLLNRISYEKSLIDAYSGEGWKGYSMEKLKPEKELQRAKSEILRRKLNIRDLFRDLDSLCAEGKLPESLFDSEGEIDSEDIFCAKCHSKELSSNNDIILCDGVCDRGFHQLCLCPPLLTEDIPPDDEGWLCPGCDCKDDCMDLINDSFGTSLSISDTWESVFPEAAAAAGNNMDNNLGLPSDDSDDDDYNPNGPEDLKIEGDESSSKESDYASASENLEGSHGDQYLGLPSEDSDDGDYDPDAPDVDNKVNEESSSSDFTSDSEDLAAAIVDNTSPGQDEEIRSASLDDVKHLRSYGKKKSKAGKKLSMADELSSLLEPDSSQEGSILVSGKRNLERLDYKKLYDETYHSDTSEDEDWTATVTPSRKKKDNATPVSPNGNASNNSSMHTPKRNGHRNKFENTKNSPAKSLDRDVKFDSREQTSRSPGGNRLREAVVQRLHISFKENQYPDRATKESLAQELGLTYQQVGKWFDNTRWSFRHSSQANSGRNTLRKATDSRAENECESPEVSGEKAKAPSSGKRKHLSENQLSEDNAHQTQRGKKMKTRRRK 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2861g00028 808 SMART HOX_1 681 744 IPR001356 GO:0003677
Vium2861g00028 808 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 333 389 IPR013083 -
Vium2861g00028 808 Gene3D - 685 751 - -
Vium2861g00028 808 MobiDBLite consensus disorder prediction 72 137 - -
Vium2861g00028 808 MobiDBLite consensus disorder prediction 430 522 - -
Vium2861g00028 808 MobiDBLite consensus disorder prediction 78 137 - -
Vium2861g00028 808 FunFam Homeobox protein HAT3.1 321 399 - -
Vium2861g00028 808 CDD homeodomain 688 741 IPR001356 GO:0003677
Vium2861g00028 808 CDD PHD_PRHA_like 340 392 IPR045876 -
Vium2861g00028 808 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 124 795 - -
Vium2861g00028 808 ProSitePatterns Zinc finger PHD-type signature. 341 392 IPR019786 -
Vium2861g00028 808 MobiDBLite consensus disorder prediction 604 622 - -
Vium2861g00028 808 MobiDBLite consensus disorder prediction 604 691 - -
Vium2861g00028 808 MobiDBLite consensus disorder prediction 752 798 - -
Vium2861g00028 808 MobiDBLite consensus disorder prediction 449 467 - -
Vium2861g00028 808 MobiDBLite consensus disorder prediction 1 28 - -
Vium2861g00028 808 MobiDBLite consensus disorder prediction 737 751 - -
Vium2861g00028 808 MobiDBLite consensus disorder prediction 158 174 - -
Vium2861g00028 808 ProSiteProfiles 'Homeobox' domain profile. 694 740 IPR001356 GO:0003677
Vium2861g00028 808 MobiDBLite consensus disorder prediction 209 230 - -
Vium2861g00028 808 Pfam Homeodomain 692 736 IPR001356 GO:0003677
Vium2861g00028 808 SUPERFAMILY Homeodomain-like 689 743 IPR009057 -
Vium2861g00028 808 ProSiteProfiles Zinc finger PHD-type profile. 338 395 IPR019787 -
Vium2861g00028 808 SMART PHD_3 340 393 IPR001965 -
Vium2861g00028 808 SUPERFAMILY FYVE/PHD zinc finger 330 398 IPR011011 -
Vium2861g00028 808 MobiDBLite consensus disorder prediction 651 678 - -
Vium2861g00028 808 MobiDBLite consensus disorder prediction 623 648 - -
Vium2861g00028 808 Pfam PHD-finger 340 395 IPR019787 -
Vium2861g00028 808 MobiDBLite consensus disorder prediction 156 244 - -
Vium2861g00028 808 MobiDBLite consensus disorder prediction 737 808 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2861g00028 Vium-Chr2861 227505 235126 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2861g00028 193 737 Homeobox Transcription Factor Family AT3G19510 45.156 4.40e-132 408
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Vium2861g00028 PHD 3e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2861g00028 - - gmx:100811458 1077.77