Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2861g00026 ATGATGATCAAAGTAGATGAAATAATCGTATCAACAGCCAAAGAGCAACCGGTTGAAGTGATGAACGGAGAAAAGGACAACTATGGAAGTGAGGATGACAACCCCAAAGAGTGGTTGAACCTGAACATAGGAGGCACTTCACTCTCAACTGTTGGAGGCCCTGATGTACAATCAAGACCAACCACTACAAAAGTTTTTTCATGCAACTTCTGCATGAGGAAGTTCTTCAGTTCACAGGCATTAGGAGGTCATCAAAACGCCCACAAGAGGGAAAGGGGAGCTGCCAGAAGGTACCAATCTCAGAGGTCGATGACAGTAATGGGCTTCTCCATGAACACGCCAATTATGCTTCGATCACTCGGTGTCCAGCCCCATTCACTCGTGCACAAGCCATGCAGAGATGGTACTGTGGTGGCACCAAGCTTTCATGATGCACATGAAAGGCTTGCGATGGCTTGGACGCCGTTCTCGTCAGAGGATCAAACAGATCTGGTGTGGCCAGGTAGCTTTCGCTTGGTTCCACAACAGCCCCAGCCACCACATGAGCCACTTAAGCTTGATTTAGACCTCAGACTCTGA 579 0.4836 MMIKVDEIIVSTAKEQPVEVMNGEKDNYGSEDDNPKEWLNLNIGGTSLSTVGGPDVQSRPTTTKVFSCNFCMRKFFSSQALGGHQNAHKRERGAARRYQSQRSMTVMGFSMNTPIMLRSLGVQPHSLVHKPCRDGTVVAPSFHDAHERLAMAWTPFSSEDQTDLVWPGSFRLVPQQPQPPHEPLKLDLDLRL 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2861g00026 192 Gene3D Classic Zinc Finger 51 112 - -
Vium2861g00026 192 SUPERFAMILY beta-beta-alpha zinc fingers 62 92 IPR036236 -
Vium2861g00026 192 PANTHER ZINC FINGER PROTEIN 4-LIKE 7 192 - -
Vium2861g00026 192 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
Vium2861g00026 192 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 93 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2861g00026 Vium-Chr2861 219299 220663 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2861g00026 64 180 C2H2 Transcription Factor Family AT1G24625 43.089 5.06e-20 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2861g00026 - - gmx:100306296 300.056