Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2861g00019 ATGGACCCCAAGGACGAATTTGAACTCACAGGGACCACTTTCTCTCAGTTACTATTCGGAGATGATCTTGATGCAACACCTGCATTGCCTCTCCCTCACCACCACTGCTCTTACGATCACCACACCCTCTCCGCTTCGCCTCTTTTCTCCTTTCACAAGCCACCCAAAATGCTATGCTTTGGAAACCATCAAACCCAACCCCACATTCCTCCCACCATCGTCACCCCTCAGAAATCTGTCATCACTTCCAGTGACTCCTCTTCTGCTTCCTCCTCCAACCACACCAACACCGCCTTCACTTCCCTATCCAAGTCCACTAAAAAGCGGAATGGGTTGGGACAAGAACCAGTCACCAAGGTGGGTGTTGGAGGCCAGAGACTAACTAAAAAGACCAAGGCAGAGAACCCCACCTCAACCGGACATGCAAAGAGGAAGGAGAAGCTTGGGGAAAGAATTGCAGCGTTACAACAGCTTGTTTCTCCCTTCGGCAAGACAGATACAGCATCGGTGCTTCACGAGGCCATGGGATATATAAGGTTTCTTCACGACCAAGTTCAGGTCCTGTGCTCTCCTTACTTGCAAAGCTTGTCATCGTCACACCACCAACACCAGCACGGTGATGGAGAAAACAACGAAGAGGAAGTGAAGAAGGACTTGAGGAGTAGGGGTCTGTGCTTGATCCCAGTGGGATGCACCGTACACGTGGCGAGTAGCAACGGTGCTGATTTTTGGTCACCCGGTGCAATAGGGAACAAAGTTTCACCATCAGGGAAGAAGTAG 780 0.5064 MDPKDEFELTGTTFSQLLFGDDLDATPALPLPHHHCSYDHHTLSASPLFSFHKPPKMLCFGNHQTQPHIPPTIVTPQKSVITSSDSSSASSSNHTNTAFTSLSKSTKKRNGLGQEPVTKVGVGGQRLTKKTKAENPTSTGHAKRKEKLGERIAALQQLVSPFGKTDTASVLHEAMGYIRFLHDQVQVLCSPYLQSLSSSHHQHQHGDGENNEEEVKKDLRSRGLCLIPVGCTVHVASSNGADFWSPGAIGNKVSPSGKK 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2861g00019 259 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 132 181 IPR011598 GO:0046983
Vium2861g00019 259 Gene3D - 141 205 IPR036638 GO:0046983
Vium2861g00019 259 MobiDBLite consensus disorder prediction 78 112 - -
Vium2861g00019 259 FunFam Transcription factor bHLH113 125 195 - -
Vium2861g00019 259 CDD bHLH_AtbHLH_like 143 188 IPR045239 -
Vium2861g00019 259 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 143 193 IPR036638 GO:0046983
Vium2861g00019 259 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 51 234 - -
Vium2861g00019 259 MobiDBLite consensus disorder prediction 78 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2861g00019 Vium-Chr2861 176419 179127 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2861g00019 143 246 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31730 57.143 1.44e-35 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2861g00019 - - gmx:100809107 313.153