Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2861g00018 ATGGACCCCAAGGACGAATTTGAACTCACAGGGACCACTTTCTCTCAGTTACTATTCGGAGATGATCTTGATGCAACACCTGCATTGCCTCTCCCTCACCACCACTGCTCTTACGATCACCACACCCTCTCCGCTTCGCCTCTTTTCTCCTTTCACAAGCCACCCAAAATGCTATGCTTTGGAAACCATCAAACCCAACCCCACATTCCTCCCACCATCGTCACCCCTCAGAAATCTGTCATCACTTCCAGTGACTCCTCTTCTGCTTCCTCCTCCAACCACACCAACACCGCCTTCACTTCCCTATCCAAGTCCACTAGTTTGCAGAAAAAGCGGAATGGGTTGGGACAAGAACCAGTCACCAAGGTGGGTGTTGGAGGCCAGAGACTAACTAAAAAGACCAAGGCAGAGAACCCCACCTCAACCGGACATGCAAAGAGGAAGGAGAAGCTTGGGGAAAGAATTGCAGCGTTACAACAGCTTGTTTCTCCCTTCGGCAAGACAGATACAGCATCGGTGCTTCACGAGGCCATGGGATATATAAGGTTTCTTCACGACCAAGTTCAGGTCCTGTGCTCTCCTTACTTGCAAAGCTTGTCATCGTCACACCACCAACACCAGCACGGTGATGGAGAAAACAACGAAGAGGAAGTGAAGAAGGACTTGAGGAGTAGGGGTCTGTGCTTGATCCCAGTGGGATGCACCGTACACGTGGCGAGTAGCAACGGTGCTGATTTTTGGTCACCCGGTGCAATAGGGAACAAAGTTTCACCATCAGGGAAGAAGTAG 789 0.5057 MDPKDEFELTGTTFSQLLFGDDLDATPALPLPHHHCSYDHHTLSASPLFSFHKPPKMLCFGNHQTQPHIPPTIVTPQKSVITSSDSSSASSSNHTNTAFTSLSKSTSLQKKRNGLGQEPVTKVGVGGQRLTKKTKAENPTSTGHAKRKEKLGERIAALQQLVSPFGKTDTASVLHEAMGYIRFLHDQVQVLCSPYLQSLSSSHHQHQHGDGENNEEEVKKDLRSRGLCLIPVGCTVHVASSNGADFWSPGAIGNKVSPSGKK 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2861g00018 262 MobiDBLite consensus disorder prediction 78 149 - -
Vium2861g00018 262 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 146 196 IPR036638 GO:0046983
Vium2861g00018 262 Gene3D - 144 209 IPR036638 GO:0046983
Vium2861g00018 262 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 51 237 - -
Vium2861g00018 262 FunFam Transcription factor bHLH113 128 198 - -
Vium2861g00018 262 CDD bHLH_AtbHLH_like 146 191 IPR045239 -
Vium2861g00018 262 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 135 184 IPR011598 GO:0046983
Vium2861g00018 262 MobiDBLite consensus disorder prediction 78 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2861g00018 Vium-Chr2861 176419 179133 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2861g00018 146 249 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31730 57.143 1.76e-35 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2861g00018 - - gmx:100809317 318.546