Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2861g00011 ATGAGCCTTAATCCTCAGAATCTCCATTTCTTGTGGAGGCTCTCATCGTTTCTTCTTCTACTTCTTCAATCTGCTACATCTCAGTCAGTTACATCTCTTAACTCTGATGGGATTCTCCTGCTAAAATTCAAATACTCCATCCTCAGCGACCCTTTGTCAGTCCTAGAAAGTTGGAACTACGATGATGCAACGCCATGTTCATGGTATGGTGTTACGTGCAACGAAATTGGAGTCCCCGGTACCCCTGATTTGTTCAGAGTAACCAGTTTGACACTTCCCAATAGCCAACTTTTGGGTTCCATTTCTGAGAACTTGGGCTTGATCCAATACCTTCGCCACATCGATCTCTCCAACAATTTCCTTAATGGCTCTCTACCCAACACTATCTTCAACTCTTCCCAGCTTCAAGTACTTTCTCTCTCAAACAATGTTATCTCGGGTCAACTAAATCAGCTGGTTGGAAAACTAACAAACCTTAAAGTTCTCAATCTCTCTGACAATGCCTTTGCCGGGTTGATCCCAGAAAACCTCACTACTCTACCAAACTTAACCGTTGTTTCTCTGAAGAGTAACTACTTCTCTGGTAGTGTCCCAACCGGGTTCAAGTACGTGGAGATTCTGGATCTGTCCTCCAACTTGTTAAACGGTTCTTTGCCAGAAGACTTTGGCGGCGAAAGCTTACGCTACATGAACCTCTCTTACAACAAGATTTCGGGAACAATTCCTCCGACATTCGCCGAACAGATTCCTGGAAACTCAACGGTGGACCTCTCATTCAACAATCTGACAGGGCCGGTACCAGACTCTTCGGCTTTGCTCAACCAGAAGACAGAGTTTCTATCAGGAAATGCTGATCTTTGTGGTAAGCCTCTGAAGATTATGTGCACCGTTCCCTCTACTGAGTCCACAGCTCCGCCCAACGTCACCACCTCTTCACCAGCCATTGCTGCCATACCGAAAATTGACTCAAACCCTTCAACAAACGCAACAGGAACCCCCACCAGTTCTCAGAATGTATCACCAAGTGGCCTAAAACCTGCCACCATAGCAGCAATTGTGGTGGGAGACTTGCTTGGCATGGCCCTTTTGGCCCTAGTCATTCTCTTCGTCTACCAACAGAGAAAGAAAAGATATTCGGATCCAAATCCAAATTCAAAACGAGACACTAATGCTGCTTCTGGTAACAACTCAGAAAAGAAATACAAAACAGTTTCACGACAAGATGCAGATGCAAAAACAGTAACTCCTTCACTTCCTTGTTCCTGCTTAACAATCAAAGAAGAAGAAACCTCAGAGGCAACTAGCTCCGACAGTGACCGCGAGAGCAACACCGCAGTGGACATCATGGCAGCACAAAACGGGAACCTTCCGAAACAAGGCACTCTTGTAACCGTTGACGGGGAAACAGATTTGGAGCTTGAGACTCTGCTTAAGGCTTCAGCGTATATTCTGGGAAACAGCCGCGTCAGCATTGTCTACAAGGCAGTGCTAGAGGATGGGAGAGCCTTTGCCGTTAGAAGGATCGGTGAGTGTGGGATTGAGAGAAGGAAGGACTTTGAGAACCAAGTGCGTGCCATCGCAAAGCTTCGCCATCCCAATTTGGTTAAGGTTCGCGGCTTCTGCTGGGGTCGAGATGATAAACTCCTGATATGTGACTACGTCCCCAATGGCAGCCTCGCCACCATTGATCACAGAAAATCAGGTTCGTCCCCTCTGAACTTGTCCCTGGAGACACGGTTGAAGATAGCAAAAGGGGTGGCACGAGGATTGGTCTTCCTTCACGAGAAGAAGCACGTGCATGGCAATGTTAAACCTGGCAACATCCTGCTAAACTCAGAAATGGAAGCCATCATAAGCGACTTTGGGCTAGACCGGCTCCTCCTGAACGATGTGACCCACAGAGCAAACGGTTCGGCTAGACAACTAATGGCGAGCCAAAGAAGCCAGCAAGACCTGCCATGTGGTTCAAGTCCCTTCGCAGCAATGGGATCATCGTCGAGTGGTGCGGGCCACATAATGCCCTATCAAGCCCCAGAGTCACTTGAGAACATCAAACCCAGTCACAAATGGGACGTGTACTCTTTTGGAATGGTGTTACTGGAGCTTCTAACCGGGAGGGTTTTCCTGGAGCGGGAGTTGGAGCAGTGGAACGAACCGGGTTTGGTGGAGGAGGAGCAGAACCGGGTTTTGAGAATGGCTGACGTAGCAATAAAATCTGAAATAGAAGGGAGGGAGAATGTGGTAGTGGCATGGTTCAAGTTGGGGCTTAGCTGTGTCTCTCATGCCCCACAAAAGAGACCCTCCATGAAAGAGACTCTACAAATCTTAGACAAGATCCATGCTGCTGCTCCACTCAATTAA 2361 0.4773 MSLNPQNLHFLWRLSSFLLLLLQSATSQSVTSLNSDGILLLKFKYSILSDPLSVLESWNYDDATPCSWYGVTCNEIGVPGTPDLFRVTSLTLPNSQLLGSISENLGLIQYLRHIDLSNNFLNGSLPNTIFNSSQLQVLSLSNNVISGQLNQLVGKLTNLKVLNLSDNAFAGLIPENLTTLPNLTVVSLKSNYFSGSVPTGFKYVEILDLSSNLLNGSLPEDFGGESLRYMNLSYNKISGTIPPTFAEQIPGNSTVDLSFNNLTGPVPDSSALLNQKTEFLSGNADLCGKPLKIMCTVPSTESTAPPNVTTSSPAIAAIPKIDSNPSTNATGTPTSSQNVSPSGLKPATIAAIVVGDLLGMALLALVILFVYQQRKKRYSDPNPNSKRDTNAASGNNSEKKYKTVSRQDADAKTVTPSLPCSCLTIKEEETSEATSSDSDRESNTAVDIMAAQNGNLPKQGTLVTVDGETDLELETLLKASAYILGNSRVSIVYKAVLEDGRAFAVRRIGECGIERRKDFENQVRAIAKLRHPNLVKVRGFCWGRDDKLLICDYVPNGSLATIDHRKSGSSPLNLSLETRLKIAKGVARGLVFLHEKKHVHGNVKPGNILLNSEMEAIISDFGLDRLLLNDVTHRANGSARQLMASQRSQQDLPCGSSPFAAMGSSSSGAGHIMPYQAPESLENIKPSHKWDVYSFGMVLLELLTGRVFLERELEQWNEPGLVEEEQNRVLRMADVAIKSEIEGRENVVVAWFKLGLSCVSHAPQKRPSMKETLQILDKIHAAAPLN 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2861g00011 786 Pfam Protein kinase domain 483 774 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2861g00011 786 SUPERFAMILY Protein kinase-like (PK-like) 483 776 IPR011009 -
Vium2861g00011 786 FunFam Leucine-rich repeat receptor-like protein kinase 203 297 - -
Vium2861g00011 786 MobiDBLite consensus disorder prediction 377 412 - -
Vium2861g00011 786 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 204 780 IPR046959 -
Vium2861g00011 786 Gene3D Transferase(Phosphotransferase) domain 1 554 784 - -
Vium2861g00011 786 FunFam Leucine-rich repeat receptor-like protein kinase 33 199 - -
Vium2861g00011 786 ProSiteProfiles Protein kinase domain profile. 478 783 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2861g00011 786 MobiDBLite consensus disorder prediction 384 400 - -
Vium2861g00011 786 Gene3D Phosphorylase Kinase; domain 1 455 553 - -
Vium2861g00011 786 Pfam Leucine rich repeat N-terminal domain 34 74 IPR013210 -
Vium2861g00011 786 CDD STKc_IRAK 484 779 - -
Vium2861g00011 786 MobiDBLite consensus disorder prediction 318 342 - -
Vium2861g00011 786 Pfam Leucine Rich Repeat 111 129 IPR001611 GO:0005515
Vium2861g00011 786 Gene3D Ribonuclease Inhibitor 202 297 IPR032675 -
Vium2861g00011 786 Gene3D Ribonuclease Inhibitor 33 201 IPR032675 -
Vium2861g00011 786 SUPERFAMILY L domain-like 38 293 - -
Vium2861g00011 786 CDD TM_EGFR-like 348 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2861g00011 Vium-Chr2861 106057 109548 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2861g00011 14 780 Receptor kinase-like Gene Family AT4G37250 49.936 0.0 697
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vium2861g00011 Pkinase 5.5e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2861g00011 - - gmx:100820334 1246.11