Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2860g00017 ATGGTTAAGTCAGAGCACAAGATCAAAACAGAACCATCATCAAAGGCAATGCGGTCTATATCCTCGTTATCAGCATCATCACCAGCACCAGTTCCAGCACCAGATAGCAAGAAGAAGAAGTACAAGGGAGTGAGAATGAGGAGCTGGGGGTCTTGGGTTTCAGAGATCAGAGCACCAAACCAGAAAACAAGAATATGGTTAGGCTCTTATTCAACCCCAGAGGCTGCAGCTAGAGCCTATGATGCTGCACTTCTGTGCCTCAAAGGCTCCTCTGCTAATTTTAATTTCCCTTTAAGCTCTTCACAATATATTCCTGGAGATGCTGTCATGTCCCCCAAATCAATCCAAAGAGTTGCTGCAGCTGCTGCAAATAGTTTCATTGACAATGCCACCATTCCCCCTTCTGCATCTCCAGCTTCAACCTCATCATCATCGTTGGTCTCATCCCCCTCGATGGCCTATTCTCCTTCGGATCAAGTCGATGATGATGCCTCACTGATATCATCTCTGGAAACCTACACCAGTTATGATCAAGCAAATGAATCAATGGCTATGAATGAGATGGAACCTTGGTACACTTTAGATGATCTTCAATCCCCCAAGTATGTTGATCAGATGTTAAGTGGTGCTTTCTTTGATGTTGATTCGTCCCATCTGCTCGATGATCTATACGAAGAAAGCGACATCCGTTTGTGGAGCTTCTGCTGA 708 0.4492 MVKSEHKIKTEPSSKAMRSISSLSASSPAPVPAPDSKKKKYKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTPEAAARAYDAALLCLKGSSANFNFPLSSSQYIPGDAVMSPKSIQRVAAAAANSFIDNATIPPSASPASTSSSSLVSSPSMAYSPSDQVDDDASLISSLETYTSYDQANESMAMNEMEPWYTLDDLQSPKYVDQMLSGAFFDVDSSHLLDDLYEESDIRLWSFC 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2860g00017 235 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 21 173 - -
Vium2860g00017 235 SUPERFAMILY DNA-binding domain 40 99 IPR016177 GO:0003677
Vium2860g00017 235 Pfam AP2 domain 40 89 IPR001471 GO:0003700|GO:0006355
Vium2860g00017 235 SMART rav1_2 40 103 IPR001471 GO:0003700|GO:0006355
Vium2860g00017 235 CDD AP2 39 99 IPR001471 GO:0003700|GO:0006355
Vium2860g00017 235 MobiDBLite consensus disorder prediction 1 43 - -
Vium2860g00017 235 Gene3D AP2/ERF domain 39 99 IPR036955 GO:0003700|GO:0006355
Vium2860g00017 235 PRINTS Ethylene responsive element binding protein signature 41 52 IPR001471 GO:0003700|GO:0006355
Vium2860g00017 235 PRINTS Ethylene responsive element binding protein signature 63 79 IPR001471 GO:0003700|GO:0006355
Vium2860g00017 235 FunFam ethylene-responsive transcription factor ERF014-like 39 99 - -
Vium2860g00017 235 ProSiteProfiles AP2/ERF domain profile. 40 97 IPR001471 GO:0003700|GO:0006355
Vium2860g00017 235 MobiDBLite consensus disorder prediction 14 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2860g00017 Vium-Chr2860 88687 90631 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2860g00017 1 234 AP2-EREBP Transcription Factor Family AT1G21910 46.800 2.98e-49 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium2860g00017 AP2 3.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2860g00017 - - pvu:PHAVU_009G123300g 360.918